Salmonella bongori NCTC 12419

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Salmonella

Description

Salmonella. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. There are now two Salmonella species, Salmonella bongori and Salmonella enterica. Certain serovars of Salmonella enterica are responsible for more serious diseases such as Typhoid fever.The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.Salmonella bongori. Salmonella bongori is the second species of Salmonella after Salmonella enterica and is considered a distant outgroup. This species is reptile-specific, is rarely found in human infections and it lacks SPI-2. (NCBI BioProject: PRJNA35217)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusSalmonella
SpeciesSalmonella bongori
StrainNCTC 12419

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Salmonella bongori NCTC 12419

Accession NumberNC_015761.1

Gene Summary

Adenine Count

1085539 bp

Thymine Count

1085208 bp

Guanine Count

1143870 bp

Cytosine Count

1145488 bp

Genome Length

4460105 bp

Protein-coding Genes

4017 genes

Non-Coding Genes

217 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+846976 - 846991Not Available
Tyrosine-type recombinase/integraseSBG_RS23450Not Available-847066 - 84766022354.6
Baseplate assembly protein vSBG_RS03925P31340+847627 - 84818019913.4
Baseplate wedge subunitSBG_RS03930Not Available+848177 - 84853612934.4
Baseplate assembly protein jSBG_RS03935Not Available+848523 - 84943132768.9
Tail protein iSBG_RS03940Not Available+849424 - 85002922492.8
Tail proteinSBG_RS03945P26700+850026 - 85080227230.6
O-acyltransferase bSBG_RS03950Not Available+851338 - 85249544790.4
Tail fiberSBG_RS03955Q9T1R1-852717 - 85318117160.3
hypothetical proteinSBG_RS22860Not Available-853514 - 85386112934.8

Displaying genes 1 – 10 of 761 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

99 records
Metabolite IDMetabolite nameStructureCAS number
BASm0009273(3S)-3-hydroxypentanoateC5H9O3Chemical structure of (3S)-3-hydroxypentanoateNot available
Average117.125Da
Monoisotopic117.05571773Da
BASm0009746N(2)-(1-hydroxy-2-oxopropyl)-dGTPC13H16N5O15P3Chemical structure of N(2)-(1-hydroxy-2-oxopropyl)-dGTPNot available
Average575.214Da
Monoisotopic574.987770149Da
BASm0009747N(2)-(1-hydroxy-2-oxopropyl)-GTPC13H16N5O16P3Chemical structure of N(2)-(1-hydroxy-2-oxopropyl)-GTPNot available
Average591.213Da
Monoisotopic590.982684769Da
BASm0009748N(2)-(1-hydroxy-2-oxoethyl)-GTPC12H14N5O16P3Chemical structure of N(2)-(1-hydroxy-2-oxoethyl)-GTPNot available
Average577.186Da
Monoisotopic576.967034704Da
BASm0009749N(2)-(1-hydroxy-2-oxoethyl)-dGTPC12H14N5O15P3Chemical structure of N(2)-(1-hydroxy-2-oxoethyl)-dGTPNot available
Average561.187Da
Monoisotopic560.972120084Da
BASm0009750N(2)-(1-hydroxy-2-oxopropyl)-GDPC13H16N5O13P2Chemical structure of N(2)-(1-hydroxy-2-oxopropyl)-GDPNot available
Average512.242Da
Monoisotopic512.023630331Da
BASm0009751N(2)-(1-hydroxy-2-oxoethyl)-GDPC12H14N5O13P2Chemical structure of N(2)-(1-hydroxy-2-oxoethyl)-GDPNot available
Average498.215Da
Monoisotopic498.007980267Da
BASm0009752N(2)-(1-hydroxy-2-oxopropyl)-GMPC13H16N5O10PChemical structure of N(2)-(1-hydroxy-2-oxopropyl)-GMPNot available
Average433.271Da
Monoisotopic433.064575893Da
BASm0009753N(2)-(1-hydroxy-2-oxoethyl)-GMPC12H14N5O10PChemical structure of N(2)-(1-hydroxy-2-oxoethyl)-GMPNot available
Average419.244Da
Monoisotopic419.048925829Da
BASm0010134Fe(III)-[N-(2,3-dihydroxybenzoyl)-L-serine]C10H8FeNO6Chemical structure of Fe(III)-[N-(2,3-dihydroxybenzoyl)-L-serine]Not available
Average294.02Da
Monoisotopic293.970098Da

Displaying 81–90 of 99 metabolites