Salmonella bongori NCTC 12419

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Salmonella

Description

Salmonella. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. There are now two Salmonella species, Salmonella bongori and Salmonella enterica. Certain serovars of Salmonella enterica are responsible for more serious diseases such as Typhoid fever.The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.Salmonella bongori. Salmonella bongori is the second species of Salmonella after Salmonella enterica and is considered a distant outgroup. This species is reptile-specific, is rarely found in human infections and it lacks SPI-2. (NCBI BioProject: PRJNA35217)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusSalmonella
SpeciesSalmonella bongori
StrainNCTC 12419

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Salmonella bongori NCTC 12419

Accession NumberNC_015761.1

Gene Summary

Adenine Count

1085539 bp

Thymine Count

1085208 bp

Guanine Count

1143870 bp

Cytosine Count

1145488 bp

Genome Length

4460105 bp

Protein-coding Genes

4017 genes

Non-Coding Genes

217 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+846976 - 846991Not Available
Tyrosine-type recombinase/integraseSBG_RS23450Not Available-847066 - 84766022354.6
Baseplate assembly protein vSBG_RS03925P31340+847627 - 84818019913.4
Baseplate wedge subunitSBG_RS03930Not Available+848177 - 84853612934.4
Baseplate assembly protein jSBG_RS03935Not Available+848523 - 84943132768.9
Tail protein iSBG_RS03940Not Available+849424 - 85002922492.8
Tail proteinSBG_RS03945P26700+850026 - 85080227230.6
O-acyltransferase bSBG_RS03950Not Available+851338 - 85249544790.4
Tail fiberSBG_RS03955Q9T1R1-852717 - 85318117160.3
hypothetical proteinSBG_RS22860Not Available-853514 - 85386112934.8

Displaying genes 1 – 10 of 761 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

99 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003992adenosylcob(III)alamin 5'-phosphateC72H99CoN18O20P2Chemical structure of adenosylcob(III)alamin 5'-phosphateNot available
Average1657.572Da
Monoisotopic1656.610118Da
BASm0003997Fe(II)-heme oC49H56FeN4O5Chemical structure of Fe(II)-heme oNot available
Average836.856Da
Monoisotopic836.361104Da
BASm0004038(R)-carnitinyl-CoAC28H46N8O18P3SChemical structure of (R)-carnitinyl-CoANot available
Average907.7Da
Monoisotopic907.188009581Da
BASm00040892'-(5''-triphospho-alpha-D-ribosyl)-3'-dephospho-CoAC26H40N7O26P5SChemical structure of 2'-(5''-triphospho-alpha-D-ribosyl)-3'-dephospho-CoANot available
Average1053.56Da
Monoisotopic1053.046472079Da
BASm0004092UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineC41H61N9O28P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineNot available
Average1189.924Da
Monoisotopic1189.312320676Da
BASm0004093di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineC87H139N7O23P2Chemical structure of di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineNot available
Average1713.045Da
Monoisotopic1711.941952079Da
BASm0004133(9Z)-hexadecenoyl-CoAC37H60N7O17P3SChemical structure of (9Z)-hexadecenoyl-CoANot available
Average999.9Da
Monoisotopic999.300119988Da
BASm0004172(R)-4'-phosphopantetheineC11H21N2O7PSChemical structure of (R)-4'-phosphopantetheineNot available
Average356.33Da
Monoisotopic356.081806356Da
BASm0004331(3S)-hydroxytetradecanoyl-CoAC35H58N7O18P3SChemical structure of (3S)-hydroxytetradecanoyl-CoANot available
Average989.86Da
Monoisotopic989.2793845Da
BASm00045922-hydroxybutanoateC4H7O3Chemical structure of 2-hydroxybutanoateNot available
Average103.098Da
Monoisotopic103.0400677Da

Displaying 51–60 of 99 metabolites