Salmonella bongori NCTC 12419

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Salmonella

Description

Salmonella. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. There are now two Salmonella species, Salmonella bongori and Salmonella enterica. Certain serovars of Salmonella enterica are responsible for more serious diseases such as Typhoid fever.The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.Salmonella bongori. Salmonella bongori is the second species of Salmonella after Salmonella enterica and is considered a distant outgroup. This species is reptile-specific, is rarely found in human infections and it lacks SPI-2. (NCBI BioProject: PRJNA35217)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusSalmonella
SpeciesSalmonella bongori
StrainNCTC 12419

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Salmonella bongori NCTC 12419

Accession NumberNC_015761.1

Gene Summary

Adenine Count

1085539 bp

Thymine Count

1085208 bp

Guanine Count

1143870 bp

Cytosine Count

1145488 bp

Genome Length

4460105 bp

Protein-coding Genes

4017 genes

Non-Coding Genes

217 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+846976 - 846991Not Available
Tyrosine-type recombinase/integraseSBG_RS23450Not Available-847066 - 84766022354.6
Baseplate assembly protein vSBG_RS03925P31340+847627 - 84818019913.4
Baseplate wedge subunitSBG_RS03930Not Available+848177 - 84853612934.4
Baseplate assembly protein jSBG_RS03935Not Available+848523 - 84943132768.9
Tail protein iSBG_RS03940Not Available+849424 - 85002922492.8
Tail proteinSBG_RS03945P26700+850026 - 85080227230.6
O-acyltransferase bSBG_RS03950Not Available+851338 - 85249544790.4
Tail fiberSBG_RS03955Q9T1R1-852717 - 85318117160.3
hypothetical proteinSBG_RS22860Not Available-853514 - 85386112934.8

Displaying genes 1 – 10 of 761 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

99 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001795pentanoateC5H9O2Chemical structure of pentanoateNot available
Average101.126Da
Monoisotopic101.0608031Da
BASm0001833(9Z)-hexadecenoateC16H29O2Chemical structure of (9Z)-hexadecenoateNot available
Average253.4003Da
Monoisotopic253.2167552Da
BASm0001842(5Z,8Z,11Z,14Z)-eicosatetraenoateC20H31O2Chemical structure of (5Z,8Z,11Z,14Z)-eicosatetraenoateNot available
Average303.467Da
Monoisotopic303.2329538Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002173D-threonateC4H7O5Chemical structure of D-threonateNot available
Average135.0954Da
Monoisotopic135.0293483Da
BASm0002319Cu(+)CuChemical structure of Cu(+)7440-50-8
Average63.546Da
Monoisotopic62.92960108Da
BASm0002593(2E)-dodecenoyl-CoAC33H52N7O17P3SChemical structure of (2E)-dodecenoyl-CoA1066-12-2
Average943.789Da
Monoisotopic943.2353235Da
BASm0002631(5Z,8Z,11Z,14Z)-eicosatetraenoyl-CoAC41H62N7O17P3SChemical structure of (5Z,8Z,11Z,14Z)-eicosatetraenoyl-CoA17046-56-9
Average1049.96Da
Monoisotopic1049.31577Da

Displaying 21–30 of 99 metabolites