Prevotella denticola F0289

Gram-negativeBacilliNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Prevotella

Description

Prevotella denticola F0289.A reference genome for the Human Microbiome Project. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusPrevotella
SpeciesPrevotella denticola
StrainF0289

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Prevotella denticola F0289

NC_015311.1

Gene Summary

Adenine Count

724269 bp

Thymine Count

733931 bp

Guanine Count

742977 bp

Cytosine Count

736412 bp

Genome Length

2937589 bp

Protein-coding Genes

2247 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
thioredoxin family proteinHMPREF9137_RS00055Not Available-15750 - 1708450595.7
hypothetical proteinHMPREF9137_RS00060Not Available-17380 - 1785317055.6
hypothetical proteinHMPREF9137_RS00065Not Available-17857 - 1848923633.1
ragb/susd family nutrient uptake outer membrane proteinHMPREF9137_RS00070Not Available-18530 - 2007758401.7
susc/raga family tonb-linked outer membrane proteinHMPREF9137_RS00075Not Available-20084 - 23569129358.0
hypothetical proteinHMPREF9137_RS00080Not Available+23776 - 239978282.32
dna polymerase ivHMPREF9137_RS00085Not Available-24071 - 2515040312.1
sugar transferaseHMPREF9137_RS00090Not Available+25300 - 2592023916.4
slbb domain-containing proteinHMPREF9137_RS00095Not Available+25926 - 2854796491.2
atp-binding proteinHMPREF9137_RS00100Not Available+28566 - 3010459346.6

Displaying genes 11 – 20 of 2313 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

192 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da

Displaying 1–10 of 192 metabolites