Desulfurobacterium thermolithotrophum DSM 11699

Gram-negativeBacilliNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Aquificota

Class

Aquificia

Order

Desulfurobacteriales

Family

Desulfurobacteriaceae

Genus

Desulfurobacterium

Description

Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) is a thermophilic, anaerobic, strictly autotrophic, sulphur-reducing Gram-positive bacterium isolated from a deep-sea hydrothermal chimney sample collected at the mid-Atlantic ridge. The cells occur singly or in pairs as small highly motile rods. The temperature range for growth is between 40 to 75 degrees Celsius, with an optimum at 70 degrees Celsius. The pH range for growth at 70 degrees Celsius is from 4.4 to 7.5, with an optimum around 6.0. The sea salt concentration range for growth is between 15 and 70 g/l with an optimum at 35 g/l. Elemental sulphur, thiosulphate and sulphite are reduced to hydrogen sulphide. (Adapted from PMID: 9734024). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumAquificota
ClassAquificia
OrderDesulfurobacteriales
FamilyDesulfurobacteriaceae
GenusDesulfurobacterium
SpeciesDesulfurobacterium thermolithotrophum
StrainDSM 11699

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Desulfurobacterium thermolithotrophum DSM 11699
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature70
Temperature rangeThermophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceAutotroph
PathogenicityNo

Genome Summary

Desulfurobacterium thermolithotrophum DSM 11699

Accession NumberNC_015185.1

Gene Summary

Adenine Count

502641 bp

Thymine Count

500431 bp

Guanine Count

271171 bp

Cytosine Count

267725 bp

Genome Length

1541968 bp

Protein-coding Genes

1551 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
prephenate dehydrataseDESTER_RS07225O67085-1406652 - 140772840358.5
zinc ribbon domain-containing proteinDESTER_RS07230Not Available+1407997 - 14081886898.18
trna (guanosine(37)-n1)-methyltransferase trmdDESTER_RS07235C0QQJ9-1408214 - 140895427822.3
ribosome maturation factor rimmDESTER_RS07240A9KLM3-1408951 - 140951721594.4
thioesterase family proteinDESTER_RS07245P44679-1409560 - 141012621773.3
menaquinone biosynthesis decarboxylaseDESTER_RS07250O30030-1410154 - 141164156394.6
nif3-like dinuclear metal center hexameric proteinDESTER_RS07255O25613+1411694 - 141247329220.4
zinc ribbon domain-containing proteinDESTER_RS07260Not Available+1412467 - 141317127714.6
ylbf family regulatorDESTER_RS07265Q24X59-1413232 - 141358812994.5
atp-binding proteinDESTER_RS07270Not Available-1413711 - 14138875996.07

Displaying genes 1461 – 1470 of 1603 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

117 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 117 metabolites