Syntrophobotulus glycolicus DSM 8271

Gram-negativeBacilliMotileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Desulfitobacteriaceae

Genus

Syntrophobotulus

Description

Glycolate is an important constituent of fruit and sugar cane and is excreted by algae and autotrophic prokaryotes under conditions of carbon dioxide limitation and excess oxygen. While aerobic degradation of glycolate has been studied in detail, its anaerobic degradation has aroused interest only recently. Syntrophobotulus glycolicus strain FlGlyR was originally isolated from anoxic sewage sludge and later in pure culture with glyoxylate as its sole substrate. The nonmotile bacterium occurs typically as single cells or in small aggregates. Oval spores form in ageing cultures at the cell ends. While Gram staining is negative, ultrastructural analysis shows Gram-positive cell wall architecture. A strictly anaerobic bacteria, it grows chemotrophically in pure culture by fermentative oxidation of glyoxylate. Glycolate is oxidized in syntrophic coculture with, e.g., Methanospirillurn hungatei or Acetobacterium woodii as a partner. No other organic or inorganic substrates are used. Glycolic acid is converted to carbon dioxide and hydrogen in syntrophic culture; glyoxylic acid is fermented in pure culture to carbon dioxide, hydrogen, and glycolic acid. Glycolate oxidation to glyoxylate and vice versa is coupled to a membrane-bound electron transport system that catalyzes either a proton potential-driven reversed electron transport from glycolate to hydrogen or a hydrogen-dependent glyoxylate reduction coupled to ATP synthesis by electron transport phosphorylation. Does not reduce sulfate, sulfite, thiosulfate, elemental sulfur, or nitrate. Cells contain menaquinone-7-10, with MK-9 as major fraction, it contains no cytochromes. It grows in a pH range of 6.7 to 8.3 with optimum pH 7.3, its temperature growth range is 15 to 37 degrees C with an optimum of 28 degrees C. Growth optimal in freshwater medium; growth also occurs in brackish-water medium with 110 mM NaCl-5 mM MgCl(2) (adapted from PMID 88634369). (HAMAP: SYNGF)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyDesulfitobacteriaceae
GenusSyntrophobotulus
SpeciesSyntrophobotulus glycolicus
StrainDSM 8271

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Syntrophobotulus glycolicus DSM 8271
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature28
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementNot Available
SporulationSporulating
Energy sourceChemotroph
PathogenicityNo

Genome Summary

Syntrophobotulus glycolicus DSM 8271


Gene Summary

Adenine Count

911985 bp

Thymine Count

915724 bp

Guanine Count

784021 bp

Cytosine Count

795009 bp

Genome Length

3406739 bp

Protein-coding Genes

3065 genes

Non-Coding Genes

317 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative dihydrofolate reductaseSGLY_RS01620Not Available+334949 - 33545819520.5
Hypothetical proteinSGLY_RS01625Not Available+335451 - 33622427714.3
Rna polymerase sigma factorSGLY_RS01630Not Available+336320 - 33697925491.2
Trna-thr;Not AvailableNot Available+337115 - 337190Not Available
Trna-tyr;Not AvailableNot Available+337201 - 337284Not Available
Trna-met;Not AvailableNot Available+337300 - 337374Not Available
Serine recombinaseSGLY_RS17345Not Available-337353 - 33894559766.5
Hypothetical proteinSGLY_RS01650Not Available-338958 - 34003741384.7
Transcriptional regulatorSGLY_RS01655Not Available-340064 - 34066922148.7
hypothetical proteinSGLY_RS01660Not Available+340843 - 3410617951.46

Displaying genes 1 – 10 of 3382 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014031Butyric acidC4H8O2Chemical structure of Butyric acid107-92-6
Average88.1051Da
Monoisotopic88.0524295Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014035Glycolic acidC2H4O3Chemical structure of Glycolic acid79-14-1
Average76.0514Da
Monoisotopic76.016043994Da
BASm0014036Glyoxylic acidC2H2O3Chemical structure of Glyoxylic acid298-12-4
Average74.0355Da
Monoisotopic74.00039393Da
BASm0014045Propionic acidC3H6O2Chemical structure of Propionic acid79-09-4
Average74.0785Da
Monoisotopic74.036779436Da
BASm0014062Valeric acidC5H10O2Chemical structure of Valeric acid109-52-4
Average102.1317Da
Monoisotopic102.068079564Da

Displaying 1–6 of 6 metabolites