Microbacterium testaceum StLB037

Gram-negative

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Microbacterium testaceum strain StLB037 is an endophytic bacterium that resides within plant hosts without causing disease symptoms. It has been isolated from potato leaves and shown to degrade both short and long chain N-acyl-L-homoserine lactone (AHL) compounds. AHLs are used by many Gram-negative bacterial species as a signal compound involved in the quorum-sensing system; many of these plant pathogens produce AHLs and regulate their virulence by AHL-mediated quorum sensing. Co-inoculation of potato slices with M.testaceum and the plant pathogen Pectobacterium carotovorum subsp. carotovorum attenuated the soft rot symptoms compared to P.carotovorum subsp. carotorvorum alone (adapted from PMID 19734660). (EBI Integr8)

Taxonomy

Kingdom	Bacillati
Phylum	Actinomycetota
Class	Actinomycetes
Order	Micrococcales
Family	Microbacteriaceae
Genus	Microbacterium
Species	Microbacterium testaceum
Strain	StLB037

Profile

Physiology
Gram staining properties	Negative
Shape	Not Available
Mobility	Not Available
Flagellar presence	Not Available
Number of membranes	2

Ecology, Host, and Life Cycle
Oxygen requirements	Not Available
Optimal temperature	Not Available
Temperature range	Not Available
Habitat	HostAssociated
Biotic relationship	Not Available
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	No

Genome Summary

Microbacterium testaceum StLB037

Gene Summary

Adenine Count

590592 bp

Thymine Count

592932 bp

Guanine Count

1395833 bp

Cytosine Count

1402677 bp

Genome Length

3982034 bp

Protein-coding Genes

3630 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
duf6412 domain-containing protein	MTES_RS00280	Not Available	+	52899 - 53177	9054.36
yidc/oxa1 family membrane protein insertase	MTES_RS00285	Not Available	+	53291 - 54022	26093.5
mfs transporter	MTES_RS00290	Not Available	-	54026 - 55243	41396.4
sco4848 family membrane protein	MTES_RS00295	Not Available	-	55357 - 55572	7454.48
trar/dksa family transcriptional regulator	MTES_RS00300	Not Available	-	55601 - 55942	12582.5
duf2834 domain-containing protein	MTES_RS00305	Not Available	+	55995 - 56351	12784.9
sdr family oxidoreductase	MTES_RS00310	Not Available	-	56386 - 57246	29396.7
winged helix-turn-helix transcriptional regulator	MTES_RS00315	Not Available	+	57340 - 57708	13337.3
aromatic acid exporter family protein	MTES_RS00320	Not Available	+	57786 - 58769	34354.1
lon peptidase substrate-binding domain-containing protein	MTES_RS00325	Not Available	+	58923 - 59576	23846.5

Displaying genes 61 – 70 of 3684 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000250	2,5-didehydro-D-gluconateC6H7O7		`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000253	2-oxopent-4-enoateC5H5O3		Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5		Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000274	aldehydo-D-galacturonateC6H9O7		Not available	Average193.132Da Monoisotopic193.0353762Da
BASm0000428	3-oxoadipateC6H6O5		Not available	Average158.11Da Monoisotopic158.022620453Da
BASm0000553	biphenyl-2,3-diolC12H10O2		Not available	Average186.2066Da Monoisotopic186.0680796Da
BASm0000592	(S)-1-phenylethanolC8H10O		Not available	Average122.1644Da Monoisotopic122.0731649Da
BASm0000893	crotonobetaineC7H13NO2		`927-89-9`	Average143.1836Da Monoisotopic143.0946287Da
BASm0000989	GlycerolC3H8O3		`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001003	phthalateC8H4O4		Not available	Average164.117Da Monoisotopic164.0120558Da

Displaying 1–10 of 485 metabolites