Thermococcus barophilus MP

CocciNon-motileAnaerobic

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Thermococci

Order

Thermococcales

Family

Thermococcaceae

Genus

Thermococcus

Description

Thermococcus barophilus (strain DSM 11836 / MP) is an anaerobic, hyperthermophilic, mixed heterotrophic, and carboxydotrophic euryarchaeon isolated from the deep sea hydrothermal vent Snakepit site on the mid-Atlantic ridge at a depth of 3,550 m. T. barophilus is the first true piezophilic, hyperthermophilic archaeon isolated, having an optimal growth at 40 MPa. It grows from 48 degrees Celsius to 100 degrees Celsius with an optimum at 85 degrees Celsius and within a pressure range of 0.1 to 85 MPa with an optimum of 40 MPa. T. barophilus possesses the carboxydotrophic pathway, which allows it to obtain energy and carbon from the oxidation of CO, and bears seven different hydrogenase complexes. The T. barophilus specific gene set, which bears little homology to proteins in the database, may provide clues to its adaptation to growth under the high-pressure conditions which are typical of the deep biosphere. (Adapted from PMID: 21217005). (HAMAP: THEBM)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassThermococci
OrderThermococcales
FamilyThermococcaceae
GenusThermococcus
SpeciesThermococcus barophilus
StrainMP

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature88
Temperature rangeHyperthermophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNo

Genome Summary

Thermococcus barophilus MP


Gene Summary

Adenine Count

588109 bp

Thymine Count

582624 bp

Guanine Count

419555 bp

Cytosine Count

419790 bp

Genome Length

2010078 bp

Protein-coding Genes

2174 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
glycoside hydrolase family 38 c-terminal domain-containing proteinTERMP_RS00060Not Available+8748 - 11414102391.0
lrp/asnc family transcriptional regulatorTERMP_RS00065Not Available+11453 - 1190517251.5
lrp/asnc family transcriptional regulatorTERMP_RS00070Not Available+11922 - 121679304.56
scyllo-inosose 3-dehydrogenaseTERMP_RS00075Not Available+12410 - 1360643519.6
3-dehydro-scyllo-inosose hydrolaseTERMP_RS00080Not Available+13661 - 1475541547.1
zinc-binding dehydrogenaseTERMP_RS00085Not Available+14792 - 1581437317.4
uxaa family hydrolaseTERMP_RS00090Not Available+15831 - 161009988.49
uxaa family hydrolaseTERMP_RS00095Not Available+16097 - 1728142488.6
sugar kinaseTERMP_RS00100Not Available+17293 - 1825236126.4
4-hydroxy-tetrahydrodipicolinate synthaseTERMP_RS00105Not Available+18258 - 1914232917.6

Displaying genes 11 – 20 of 2283 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

10 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002282(2R)-2,3-dihydroxy-3-methylbutanoateC5H9O4Chemical structure of (2R)-2,3-dihydroxy-3-methylbutanoateNot available
Average133.1226Da
Monoisotopic133.0500838Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003491(2S)-2-acetolactateC5H7O4Chemical structure of (2S)-2-acetolactateNot available
Average131.108Da
Monoisotopic131.0349823Da
BASm0017271NADC21H28N7O14P2Chemical structure of NAD53-84-9
Average664.433Da
Monoisotopic664.116946663Da
BASm00202981,1-Diethoxy ethaneC6H14O2Chemical structure of 1,1-Diethoxy ethane75-07-0
Average118.1742Da
Monoisotopic118.099379692Da

Displaying 1–10 of 10 metabolites