Caldicellulosiruptor kronotskyensis 2002

Gram-positiveBacilliMotileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Caldicellulosiruptorales

Family

Caldicellulosiruptoraceae

Genus

Caldicellulosiruptor

Description

Cellulolytic capability is widely distributed across the domain bacteria and extremely thermophilic cellulose-degrading microorganisms are of particular fundamental and biotechnological interest owing to the presence of highly thermostable enzymes. Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 / 2002 is a strictly anaerobic, cellulolytic, non-spore-forming, extremely thermophilic, Gram-positive bacterium isolated from a terrestrial neutral geothermal spring in Geyser Valley in the Kronotsky National Park, region of Kamchatka (Far East, Russia). Cells are short, straight rods (3-3.2 x 0.5-0.7 mm) with flagella. Temperature range for growth is between 45-82 degrees Celsius, with optimum growth at 70 degrees Celsius. The pH range for growth is between 6.0-8.0, with optimum growth at pH 7.0. It is a chemo-organoheterotroph which is capable of fermenting a wide spectrum of carbohydrates (cellulose, starch, xylan, dextran, pectin, cellobiose, glucose, fructose, sucrose, xylose, maltose, galactose, lactose, arabinose, mannitol and yeast extract). It does not grow with pyruvate, chitin, raffinose, trehalose, ribose or peptone. (Adapted from PMID: 21216991 and 18523201). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderCaldicellulosiruptorales
FamilyCaldicellulosiruptoraceae
GenusCaldicellulosiruptor
SpeciesCaldicellulosiruptor kronotskyensis
Strain2002

Profile

Physiology
Gram staining propertiesPositive
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Caldicellulosiruptor kronotskyensis 2002
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature45
Temperature rangeThermophilic
HabitatHot spring
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceheterotroph; organotroph; chemotroph
PathogenicityNo

Genome Summary

Caldicellulosiruptor kronotskyensis 2002

Accession NumberNC_014720.1

Gene Summary

Adenine Count

926791 bp

Thymine Count

918943 bp

Guanine Count

500174 bp

Cytosine Count

497877 bp

Genome Length

2843785 bp

Protein-coding Genes

2583 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Trna-gluNot AvailableNot Available+60572 - 60646Not Available
aldo/keto reductaseCALKRO_RS00195O81884+60925 - 6205842055.1
stage ii sporulation protein mCALKRO_RS00200Q58203-62119 - 6269121007.9
mbl fold metallo-hydrolaseCALKRO_RS00205B7IG18+62850 - 6348223585.6
o-antigen ligase family proteinCALKRO_RS00210Not Available+63498 - 6571483525.3
glycosyltransferaseCALKRO_RS00215Not Available+65729 - 6683842365.6
glycosyltransferaseCALKRO_RS00220Not Available+66984 - 6794938168.4
o-antigen ligaseCALKRO_RS00225Not Available+67952 - 6938255592.3
glycosyltransferaseCALKRO_RS00230Not Available+69348 - 7017232468.6
flippaseCALKRO_RS00235P37746+70228 - 7167656105.0

Displaying genes 41 – 50 of 2643 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

128 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000333(1R,4R)-bornane-2,5-dioneC10H14O2Chemical structure of (1R,4R)-bornane-2,5-dioneNot available
Average166.22Da
Monoisotopic166.0993797Da
BASm0000338(1R,4R,5R)-5-hydroxycamphorC10H16O2Chemical structure of (1R,4R,5R)-5-hydroxycamphorNot available
Average168.2328Da
Monoisotopic168.115029756Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 128 metabolites