Ferrimonas balearica DSM 9799

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Ferrimonadaceae

Genus

Ferrimonas

Description

Ferrimonas balearica (strain DSM 9799 / CCM 4581 / PAT) is a motile, facultatively anaerobic, non spore-forming Gram-negative bacterium isolated from the upper few centimeters of marine sediment of the Palma de Mallorca harbor, Spain. This is the first completed genome sequence of a member of the genus Ferrimonas. The generic name derives from the Latin word "ferrum" meaning "iron" and the Greek word "monas" meaning "unit", referring to an iron(III)-reducing cell. The cells are straight rods with rounded ends and appear singly, occasionally in pairs or short chains and usually not encapsulated. F. balearica is motile by means of monotrichous flagella. Colonies produce a black iron precipitate when the cells are grown on TSI agar, and are often brown and mucous when the cells are grown under aerobic conditions. F. balearica is of special interest because it is a chemoorganotroph and has a strictly respiratory metabolism with oxygen, nitrate, Fe(III)-oxyhydroxide, Fe(III)-citrate, MnO2, selenate, selenite and thiosul-fate as electron acceptors F. balearica requires a minimum of 0.5% NaCl for growth, with a range of NaCl tolerance of 0.5%-7.5%. It does not grow at 5 or 44 degrees Celsius but does grow at 42 degrees Celsius. The pH range for growth is 6-9. The genus Ferrimonas can be distinguished from other strictly respiratory Gram-negative genera of the Gammaproteobacteria based on its ability to reduce Fe(III), denitrification, growth at 42 degrees Celsius, presence of phenylalanine deaminase activity, inability to grow in NaCL-free media, lack of gelatinase, urease and a negative reaction of Simmons citrate test. (Adapted from PMID 21304747). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyFerrimonadaceae
GenusFerrimonas
SpeciesFerrimonas balearica
StrainDSM 9799

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Ferrimonas balearica DSM 9799
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNo

Genome Summary

Ferrimonas balearica DSM 9799


Gene Summary

Adenine Count

848677 bp

Thymine Count

853595 bp

Guanine Count

1290264 bp

Cytosine Count

1286623 bp

Genome Length

4279159 bp

Protein-coding Genes

3788 genes

Non-Coding Genes

149 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
lysr family transcriptional regulatorFBAL_RS11195Not Available+2467883 - 246875832723.2
mosc domain-containing proteinFBAL_RS11200Not Available+2468799 - 246929017262.2
duf885 family proteinFBAL_RS11205Not Available+2469363 - 247118968989.8
lysr family transcriptional regulatorFBAL_RS11210Not Available+2471304 - 247222134127.1
Trna-leuNot AvailableNot Available+2472343 - 2472429Not Available
Trna-cysNot AvailableNot Available+2472444 - 2472517Not Available
Trna-glyNot AvailableNot Available+2472558 - 2472633Not Available
cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferaseFBAL_RS11230Not Available-2472847 - 247340120427.8
excinuclease abc subunit uvrcFBAL_RS11235Not Available-2473449 - 247528768353.6
uvry/sira/gaca family response regulator transcription factorFBAL_RS11240Not Available-2475299 - 247594023750.0

Displaying genes 2271 – 2280 of 3937 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1724 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1724 metabolites