Thermosediminibacter oceani DSM 16646

Gram-negativeBacilliMotileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Thermosediminibacterales

Family

Thermosediminibacteraceae

Genus

Thermosediminibacter

Description

Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) is an anaerobic, thermophilic, Gram-negative bacterium isolated from enrichment cultures obtained from deep sea sediments of Peru Margin collected during Leg 201 of the Ocean Drilling Program. The cells are straight to curved rods, 0.2-0.7 um in diameter and 1.5-16 um in length. Cells occur singly, in pairs, or in chains and tend to elongate and form aggregates. It grows with a range of pH from 6.3 to 9.3 with an optimum at 7.5 and a temperature range from 52 to 76 degrees Celsius with an optimum at 68 degrees Celsius. The salinity range for growth is from 0 to 6% (w/v), with an optimum at 1%. Cellobiose, fructose, galactose, glucose, maltose, mannose, raffinose, sucrose, trehalose, xylose, methanol, inositol, manitol, sorbitol, lactate, pyruvate serve as carbon and energy. Thiosulfate, elemental sulfur, and MnO2 can serve as electron acceptors. (Adapted from: http://standardsingenomics.org/index.php/sigen/article/view/sigs.1133078/374 and PMID: 15965715). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderThermosediminibacterales
FamilyThermosediminibacteraceae
GenusThermosediminibacter
SpeciesThermosediminibacter oceani
StrainDSM 16646

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Thermosediminibacter oceani DSM 16646
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature68
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Thermosediminibacter oceani DSM 16646


Gene Summary

Adenine Count

607343 bp

Thymine Count

605177 bp

Guanine Count

536750 bp

Cytosine Count

530765 bp

Genome Length

2280035 bp

Protein-coding Genes

2237 genes

Non-Coding Genes

96 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1233246 - 1233257Not Available
Tyrosine-type recombinase/integraseTOCE_RS06345Not Available-1238096 - 123898333916.5
stage ii sporulation protein mTOCE_RS06350Not Available-1239042 - 123966823302.5
endonuclease q family proteinTOCE_RS06355Not Available-1239729 - 124090143214.3
Adp-ribose pyrophosphataseTOCE_RS06360Not Available-1240901 - 124144320312.4
duf3866 family proteinTOCE_RS06365Not Available-1241386 - 124253741786.3
hypothetical proteinTOCE_RS06370Not Available-1242559 - 124334728732.2
copper transporterTOCE_RS06375Not Available-1243358 - 124407126945.9
putative cytokinetic ring protein steaTOCE_RS06380Not Available-1244083 - 124521041415.2
TransposaseTOCE_RS06385Not Available-1245445 - 124679752750.3

Displaying genes 1 – 10 of 2333 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites