Dehalogenimonas lykanthroporepellens BL-DC-9

Gram-negativesphereNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Chloroflexota

Class

Dehalococcoidia

Order

Dehalococcoidales

Family

Dehalococcoidaceae

Genus

Dehalogenimonas

Description

Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) is a strictly anaerobic, reductively dechlorinating Gram-negative bacterium isolated from groundwater at a superfund (law designs to clean up sites contaminated with hazardous substances) site located near Baton Rouge, USA, in an area contaminated by high concentrations of several chlorinated alkanes and alkenes. Using H2 as an electron donor, D. lykanthroporepellens couples cell growth to reductive dechlorination of 1,2,3-trichloropropane (1,2,3-TCP), a toxic and likely carcinogenic compound. It also couples cell growth to reductive dihaloelimination reactions involving a variety of other polychlorinated aliphatic alkanes. 1,2-dichloropropane (1,2-DCP) is transformed to propene, 1,2-dichloroethane (1,2-DCA) is transformed to ethene, 1,1,2-trichloroethane (1,1,2-TCA) is transformed to vinyl chloride, 1,1,2,2-TeCA is transformed to a mixture of cis- and trans-dichloroethene (DCE). Unlike some other reductively dehalogenating bacteria, in all of the reductive dechlorination reactions characterized to date, D. lykanthroporepellens appears to exclusively utilize vicinally chlorinated alkanes as electron acceptors via dihaloelimination reactions. Sequencing the genome of D. lykanthroporepellens expands the scientific understanding needed to support the incorporation of biological processes into decision making for environmental remediation and/or long-term stewardship, particularly at sites contaminated with chlorinated alkanes. At present, enzymes and metabolic pathways associated with reductive dehalogenation of chlorinated alkanes remain largely unknown, hampering use of DNA-based approaches in decision-making regarding several environmentally important contaminants (e.g., 1,2,3-TCP, 1,2-DCA). (adapted from PMID: http://genome.jgi-psf.org/dehly/dehly.home.html). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumChloroflexota
ClassDehalococcoidia
OrderDehalococcoidales
FamilyDehalococcoidaceae
GenusDehalogenimonas
SpeciesDehalogenimonas lykanthroporepellens
StrainBL-DC-9

Profile

Physiology
Gram staining propertiesNegative
Shapesphere
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Dehalogenimonas lykanthroporepellens BL-DC-9
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature32
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNo

Genome Summary

Dehalogenimonas lykanthroporepellens BL-DC-9


Gene Summary

Adenine Count

377077 bp

Thymine Count

381104 bp

Guanine Count

467479 bp

Cytosine Count

460850 bp

Genome Length

1686510 bp

Protein-coding Genes

1686 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
glycerol-3-phosphate acyltransferaseDEHLY_RS00055Not Available+9273 - 995924655.7
fmdb family zinc ribbon proteinDEHLY_RS08850Not Available+10114 - 103026365.59
hypothetical proteinDEHLY_RS09215Not Available+10519 - 106775727.03
muconolactone delta-isomerase family proteinDEHLY_RS00065Not Available+10859 - 1116111126.3
pled family two-component system response regulatorDEHLY_RS00070Not Available+11262 - 1163613716.7
sdr family nad(p)-dependent oxidoreductaseDEHLY_RS00075Not Available+11926 - 1294537088.3
b12-binding domain-containing radical sam proteinDEHLY_RS00080Not Available-12981 - 1444455845.2
radical sam proteinDEHLY_RS00085Not Available-14457 - 1523628802.6
dead/deah box helicaseDEHLY_RS00090Not Available-15236 - 1596326567.6
Trna-valNot AvailableNot Available+16142 - 16217Not Available

Displaying genes 31 – 40 of 1752 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0004531(6S)-NADHXC21H29N7O15P2Chemical structure of (6S)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da
BASm0004532(6R)-NADHXC21H29N7O15P2Chemical structure of (6R)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da
BASm0004533(6S)-NADPHXC21H28N7O18P3Chemical structure of (6S)-NADPHXNot available
Average759.409Da
Monoisotopic759.0725624Da
BASm0004534(6R)-NADPHXC21H28N7O18P3Chemical structure of (6R)-NADPHXNot available
Average759.409Da
Monoisotopic759.072562403Da

Displaying 1–4 of 4 metabolites