Syntrophothermus lipocalidus DSM 12680

Gram-negativeBacilliNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Syntrophomonadaceae

Genus

Syntrophothermus

Description

Syntrophothermus lipocalidus is a thermophilic, neutrophilic, fatty-acid oxidizing syntroph, which was obtained from granular sludge of a thermophilic (55 degrees Celsius) upflow anaerobic sludge blanket (UASB) reactor which had been fed with an artificial wastewater containing sucrose, acetate and propionate as the major carbon sources i.e. from wastewater treatment sludge. Cells are weakly motile, slightly curved rods with round ends, 2-4 um long and 0.4-0.5 um wide, occurring singly or in pairs. Some flagella are seen by electron microscopy. Cells strain Gram negative, although the strain is a Firmicute. It is a strict anaerobe, growth in pure culture is observed only on crotonate. Fermentation products from crotonate are almost equimolar amounts of acetate and butyrate. In coculture with M. thermoautotrophicum strain delta H (syntrophic growth), under optimal condition, 55 degrees Celsius and neutral pH, strain TGB-C1T is able to oxidize the following saturated fatty acids: butyrate (20 mM), straight chain fatty acids from C4 to C10 (5 mM) and isobutyrate (5 mM). In coculture fatty acids with even numbers of carbon atoms are changed to acetate and methane, whilst fatty acids having odd numbers of carbon atoms are degraded to acetate, propionate and methane (adapted from PMID 10758888). (HAMAP: SYNLT)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilySyntrophomonadaceae
GenusSyntrophothermus
SpeciesSyntrophothermus lipocalidus
StrainDSM 12680

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Syntrophothermus lipocalidus DSM 12680
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature55
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Syntrophothermus lipocalidus DSM 12680


Gene Summary

Adenine Count

587412 bp

Thymine Count

591567 bp

Guanine Count

612971 bp

Cytosine Count

613609 bp

Genome Length

2405559 bp

Protein-coding Genes

2339 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaSLIP_RS00005Not Available+108 - 141850460.4
dna polymerase iii subunit betaSLIP_RS00010Not Available+1549 - 269742440.1
dna replication/repair protein recfSLIP_RS00015Not Available+2716 - 382242019.1
extracellular matrix regulator rembSLIP_RS00020Not Available+3826 - 40869615.86
dna topoisomerase (atp-hydrolyzing) subunit bSLIP_RS00025Not Available+4089 - 599370852.9
dna gyrase subunit aSLIP_RS00030Not Available+6225 - 866091831.0
pyridoxal 5'-phosphate synthase lyase subunit pdxsSLIP_RS00035Not Available+8701 - 958531805.0
pyridoxal 5'-phosphate synthase glutaminase subunit pdxtSLIP_RS00040Not Available+9575 - 1014721016.7
alanine--glyoxylate aminotransferase family proteinSLIP_RS00045Not Available+10465 - 1162842496.0
phosphoglycerate dehydrogenaseSLIP_RS00050Not Available+11632 - 1321858137.3

Displaying genes 1 – 10 of 2395 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014031Butyric acidC4H8O2Chemical structure of Butyric acid107-92-6
Average88.1051Da
Monoisotopic88.0524295Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014045Propionic acidC3H6O2Chemical structure of Propionic acid79-09-4
Average74.0785Da
Monoisotopic74.036779436Da
BASm0014062Valeric acidC5H10O2Chemical structure of Valeric acid109-52-4
Average102.1317Da
Monoisotopic102.068079564Da

Displaying 1–4 of 4 metabolites