Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1

Gram-positiveRodNon-motileFacultative

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Propionibacteriaceae

Genus

Propionibacterium

Description

All members of the genus Propionibacterium produce propionic acid as a major metabolic end-product; however they are divided into 2 groups, a cutaneous group (which can cause acne) and a dairy group used in cheese production. P.freudenreichii has been long used in Emmental-type cheese ripening, where it drives fermentation of lactate into propionate, acetate and CO(2), resulting in holes. It also plays a role in flavor development of these cheeses. P.freudenreichii are also used in the production of vitamin B12, and strains that overproduce this vitamin have been developed. Additionally as a producer of bifidogenic compounds it stimulates growth of bifidobacteria, which are beneficial to humans. The genome sequence of strain CIRM-BIA1 (other synonyms DSM 4902 / NCIB 8099 / VPI 0405) has 22 insertion sequences, 72 different transposases and a few prophages. No pathogenicity factors from the related acne-causing P.acnes were detected in P.freundenreichii. It is able to synthesize all amino acids and nucleotides, and all vitamins except pantothenate and biotin; while the thiamine pathway seems complete this bacteria requires thiamine for growth. This bacteria grows only poorly in milk, and grows in cheese mainly due to its ability to ferment lactic acid anaerobically. It can survive the cheese cooking step (heating to 54 degrees Celsius for about 30 minutes) in a strain dependent fashion (adapted from PMID 20668525). (HAMAP: PROFC)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyPropionibacteriaceae
GenusPropionibacterium
SpeciesPropionibacterium freudenreichii
StrainCIRM-BIA1

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1


Gene Summary

Adenine Count

428064 bp

Thymine Count

428381 bp

Guanine Count

878125 bp

Cytosine Count

881814 bp

Genome Length

2616384 bp

Protein-coding Genes

2282 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
ammememoradisam system radical sam enzymePFREUD_RS00105Not Available+28651 - 2973939971.5
duf3566 domain-containing proteinPFREUD_RS00110Not Available+29896 - 3041418063.0
Trna-ileNot AvailableNot Available+30488 - 30561Not Available
ybjn domain-containing proteinPFREUD_RS00120Not Available+30652 - 3109815689.7
ybjn domain-containing proteinPFREUD_RS00125Not Available+31113 - 3157116831.0
hypothetical proteinPFREUD_RS00130Not Available-31608 - 3203014707.2
laci family dna-binding transcriptional regulatorPFREUD_RS00135Not Available+32291 - 3307327436.7
hypothetical proteinPFREUD_RS13030Not Available+33208 - 333665636.76
gfo/idh/moca family proteinPFREUD_RS00140Not Available+33744 - 3493442494.0
mfs transporterPFREUD_RS00145Not Available+34987 - 3660358127.8

Displaying genes 21 – 30 of 2336 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1606 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 1606 metabolites