Segniliparus rotundus DSM 44985

Gram-negativeBacilliNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Segniliparaceae

Genus

Segniliparus

Description

Segniliparus rotundus (strain ATCC BAA-972 / CDC 1076 / CIP 108378 / DSM 44985 / JCM 13578) is an aerobic, chemoorganotrophic Gram-negative bacterium isolated from human sputum in Tennessee, USA and is probably an opportunistic pathogen. It is susceptible to amikacin, cefoxitan, clarith-romycin, ciprofloxacin, doxycycline, imipenem and sulfamethoxazole at or below the respective MIC breakpoints but intermediate to tobramycin. It grows at temperatures between 28 and 37 degrees, and the optimum temperature is 33 degrees. Glucose, maltose, D-fructose and trehalose are used as carbon source for growth with acid production. (adapted from: http://standardsingenomics.org/index.php/sigen/article/view/sigs.791633). (HAMAP: SEGRD)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilySegniliparaceae
GenusSegniliparus
SpeciesSegniliparus rotundus
StrainDSM 44985

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Segniliparus rotundus DSM 44985
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature32
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityYes

Genome Summary

Segniliparus rotundus DSM 44985

NC_014168.1

Gene Summary

Adenine Count

521225 bp

Thymine Count

527349 bp

Guanine Count

1057651 bp

Cytosine Count

1051302 bp

Genome Length

3157527 bp

Protein-coding Genes

3023 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+36087 - 36098Not Available
Hnh endonucleaseSROT_RS00310Not Available+42807 - 4308510026.9
hypothetical proteinSROT_RS16275Not Available+43082 - 432676664.66
Dna binding proteinSROT_RS00315Not Available+43504 - 437679427.02
TerminaseSROT_RS00320Not Available+43751 - 4516651131.1
Portal proteinSROT_RS00325Not Available+45163 - 4656651065.1
Capsid maturation proteaseSROT_RS00330Not Available+46550 - 4723324109.4
Scaffolding proteinSROT_RS00335Not Available+47285 - 4776116678.4
Major capsid proteinSROT_RS00340Not Available+47788 - 4869632793.4
Head-to-tail connector proteinSROT_RS00345Not Available+48841 - 4930816130.1

Displaying genes 1 – 10 of 3114 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

428 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 428 metabolites