Arcobacter nitrofigilis DSM 7299

Gram-negativeBacilliNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Arcobacteraceae

Genus

Arcobacter

Description

Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / LMG 7604 / NCTC 12251 / CI) is a microaerophilic, symbiotic Gram-negative bacterium isolated from the roots of Spartina alterniflora Loisel (cordgrass) growing in salty marshes on the east coast of Canada. The species epithet nitrofigilis means "nitrogen-fixing" and Arcobacter meaning "bow-shaped rod". A. nitrofigilis is of phylogenetic interest because of its lifestyle as a symbiotic organism in a marine environment in contrast to many other Arcobacter species which are associated with warm-blooded animals and tend to be pathogenic. A. nitrofigilis cells are Gram-negative, bow-shaped or curved rods. Motility is based on a single, polar flagellum and results in rapid corkscrew motion. The habitat of all known A. nitrofigilis isolates is either the roots or the sediment around the roots of S. alterniflora Loisel growing in salt marshes. Although no pathogenic association has been described so far, A. nitrofigilis is among five Arcobacter species that were isolated from food samples such as meat and shell-fish varieties. The optimum growth temperature is 30 degrees Celsius and the temperature range is from 10-37 degrees Celsius. Neither spores nor granules are present but a brown pigment is formed from tryptophan. Growth occurs under microaerophilic conditions with oxygen as terminal electron acceptor, and under anaerobic conditions fumarate or aspartates are necessary. The metabolism of A. nitrofigilis is chemoorganotrophic with organic acids and amino acids used as carbon sources but carbohydrates are neither oxidized nor fermented. All strains of the species are halotolerant and require a minimum of 0.5% NaCl for growth and can tolerate up to 7% NaCl. A. nitrofigilis is susceptible to cephalothin and nalidixic acid but is resistant to vancomycin. (adapted from: PMID 21304714). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyArcobacteraceae
GenusArcobacter
SpeciesArcobacter nitrofigilis
StrainDSM 7299

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Arcobacter nitrofigilis DSM 7299
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipSymbiotic
Host(s)Spartina alterniflora
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemosynthetic
PathogenicityNo

Genome Summary

Arcobacter nitrofigilis DSM 7299


Gene Summary

Adenine Count

1145389 bp

Thymine Count

1141501 bp

Guanine Count

452625 bp

Cytosine Count

452720 bp

Genome Length

3192235 bp

Protein-coding Genes

3131 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaARNIT_RS00005A8EQT0+71 - 138449825.4
dna polymerase iii subunit betaARNIT_RS00010Q9ZLX4+1545 - 261540516.8
dna topoisomerase (atp-hydrolyzing) subunit bARNIT_RS00015O87667+2629 - 494786883.8
type ii toxin-antitoxin system rele/pare family toxinARNIT_RS00020Not Available+5120 - 545212637.6
helix-turn-helix domain-containing proteinARNIT_RS00025Not Available+5442 - 574111136.4
m48 family metallopeptidaseARNIT_RS00030P42597+5806 - 630919917.4
duf3010 family proteinARNIT_RS00035Not Available+6548 - 694314877.9
trap transporter substrate-binding proteinARNIT_RS00040Q8YSQ6+7254 - 826736972.0
trap transporter small permease subunitARNIT_RS00045Not Available+8267 - 877919921.2
trap transporter large permease subunitARNIT_RS00050Not Available+8779 - 1010447272.4

Displaying genes 1 – 10 of 3201 in total

Metabolites

1829 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da

Displaying 1–10 of 1829 metabolites