Zunongwangia profunda SM-A87

Gram-negativerodNon-motileaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Zunongwangia

Description

Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) is an orange-pigmented, strictly aerobic, oxidase- and catalase-positive, Gram-negative bacterium isolated at a depth of 1 245 m from deep-sea sediment in the southern Okinawa Trough with in situ temperature of 4.7 degrees Celsius. Z. profunda has various extracellular enzymes for carbohydrate, lipid and DNA degradation. These extracellular enzymes suggest that the bacterium is able to hydrolyze organic materials in the sediment, especially carbohydrates and proteinaceous organic nitrogen. It is also moderately halophilic. (Adapted from PMID: 20398413). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusZunongwangia
SpeciesZunongwangia profunda
StrainSM-A87

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Zunongwangia profunda SM-A87
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNo

Genome Summary

Zunongwangia profunda SM-A87

NC_014041.1

Gene Summary

Adenine Count

1636611 bp

Thymine Count

1634226 bp

Guanine Count

933991 bp

Cytosine Count

923359 bp

Genome Length

5128187 bp

Protein-coding Genes

4444 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
apc family permeaseZPR_RS00105Q8X845-22478 - 2377046043.3
glutamine--trna ligase/yqey domain fusion proteinZPR_RS00110Q7UX42+24080 - 2575964921.8
ytxh domain-containing proteinZPR_RS00115Not Available+25888 - 2626213697.3
phage holin family proteinZPR_RS00120Not Available+26268 - 2662413175.3
duf6327 family proteinZPR_RS00125Not Available+26625 - 268408089.19
glutamate--trna ligaseZPR_RS00130A0M6K0-26931 - 2844858360.4
hypothetical proteinZPR_RS00135Not Available+28936 - 31866113603.0
rrna maturation rnase ybeyZPR_RS00140A0M6J8+31859 - 3229917366.3
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgZPR_RS00145A0M6J7+32315 - 3418669792.2
hypothetical proteinZPR_RS00150Not Available+34220 - 3476821441.6

Displaying genes 21 – 30 of 4505 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

436 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 436 metabolites