Geodermatophilus obscurus DSM 43160

Gram-negativeCocciNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Geodermatophilales

Family

Geodermatophilaceae

Genus

Geodermatophilus

Description

Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) is an aerobic Gram-positive bacterium isolated from the Amargosa desert in Nevada. It is a member of the Actinomycetales that grows in dry soil or on the surfaces of rocks and monuments (where it causes structural damage). (HAMAP: GEOOG)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderGeodermatophilales
FamilyGeodermatophilaceae
GenusGeodermatophilus
SpeciesGeodermatophilus obscurus
StrainDSM 43160

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Geodermatophilus obscurus DSM 43160
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature29
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNo

Genome Summary

Geodermatophilus obscurus DSM 43160

NC_013757.1

Gene Summary

Adenine Count

692029 bp

Thymine Count

692666 bp

Guanine Count

1972021 bp

Cytosine Count

1965781 bp

Genome Length

5322497 bp

Protein-coding Genes

5070 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaGOBS_RS00005Not Available+314 - 206864940.5
dna polymerase iii subunit betaGOBS_RS00010Not Available+2787 - 394740913.7
phosphogluconate dehydrogenase (nad(+)-dependent, decarboxylating)GOBS_RS00015Not Available+4135 - 506733185.5
dna replication/repair protein recfGOBS_RS00020Not Available+5185 - 638442622.0
duf721 domain-containing proteinGOBS_RS00025Not Available+6381 - 688117933.4
hypothetical proteinGOBS_RS00030Not Available+6940 - 786332198.6
abc transporter atp-binding proteinGOBS_RS00035Not Available+7886 - 965260603.8
sdr family oxidoreductaseGOBS_RS00040Not Available-9749 - 1128155509.9
apc family permeaseGOBS_RS00045Not Available+11414 - 1283849221.0
dna topoisomerase (atp-hydrolyzing) subunit bGOBS_RS00050Not Available+13195 - 1523774981.0

Displaying genes 1 – 10 of 5130 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

94 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00024581D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideC14H25NO11Chemical structure of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideNot available
Average383.35Da
Monoisotopic383.142760629Da
BASm00037771D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosideC15H29N2O11SChemical structure of 1D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosideNot available
Average445.46Da
Monoisotopic445.1486574Da
BASm00037801D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside 3-phosphateC14H24NO14PChemical structure of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside 3-phosphateNot available
Average461.314Da
Monoisotopic461.094538615Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0010299enolpyruvoyl-2-diphospho-5'-guanosineC13H14N5O13P2Chemical structure of enolpyruvoyl-2-diphospho-5'-guanosineNot available
Average510.226Da
Monoisotopic510.007980267Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da

Displaying 1–10 of 94 metabolites