Robiginitalea biformata HTCC2501

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Robiginitalea

Description

Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146) is an aerobic, obligatory chemoheterotrophic Gram-negative bacterium with carotenoid pigments and dimorphic growth phases. It was isolated from the Sargasso Sea (Atlantic Ocean) by dilution-to-extinction culturing. As the species name implies, the morphology of R. biformata varies from straight rods (in exponential phase) to coccoid cells (in stationary phase). R. biformata is short to moderately long rods, and forms colonies with a characteristic rusty red pigment. It contains genes for carotenoid biosynthesis but no genes for phototrophy, confirming the obligately chemoheterotrophic metabolism. R. biformata has also a set of genes for a putative carbon monoxide dehydrogenase and enzymes required to degrade high-molecular-weight compounds, including protease, sulfatase, pectinase, chitinase, _-amylases, and a predicted glycogen debranching enzyme. It cannot degrade crystalline cellulose. The Flavobacteriaceae, and particularly R. biformata, may be promising sources of diverse novel monocyclic carotenoids, such as saproxanthin and myxol which are rarely found in nature but were demonstrated previously to show significant antioxidative activities against lipid peroxidation and neuroprotective effects against L-glutamate toxicity. R. biformata may provide a model for studying the biosynthesis of carotenoid congeners produced by marine Flavobacteriaceae and related species. (Adapted from PMID: 19767438). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusRobiginitalea
SpeciesRobiginitalea biformata
StrainHTCC2501

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Robiginitalea biformata HTCC2501
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature30
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceChemoheterotroph
PathogenicityNo

Genome Summary

Robiginitalea biformata HTCC2501


Gene Summary

Adenine Count

786278 bp

Thymine Count

792040 bp

Guanine Count

973982 bp

Cytosine Count

978083 bp

Genome Length

3530383 bp

Protein-coding Genes

3076 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
1_nc_021799: structural proteinRB2501_RS13735Not Available-3098409 - 310058077956.5
1_nc_021799: structural proteinRB2501_RS13740Not Available-3100585 - 310274780782.9
1_nc_021799: phage tail tape measure proteinRB2501_RS13745Not Available-3102747 - 3105617106660.0
1_nc_021799: hypothetical proteinRB2501_RS13750Not Available-3105610 - 310620023031.6
1_nc_021799: structural proteinRB2501_RS13755Not Available-3106166 - 310662717434.0
hypothetical proteinRB2501_RS16305Not Available-3106581 - 31067967711.95
1_nc_021799: structural proteinRB2501_RS13765Not Available-3106807 - 310770931910.2
Hypothetical proteinRB2501_RS13770Not Available-3107728 - 310826120165.8
Hypothetical proteinRB2501_RS13775Not Available-3108261 - 310882421061.9
Hypothetical proteinRB2501_RS13780Not Available-3108824 - 310985237175.4

Displaying genes 1 – 10 of 3146 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites