Capnocytophaga ochracea DSM 7271

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Capnocytophaga

Description

Capnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / VPI 2845) is a capnophilic (CO2-requiring), gliding Gram-negative bacterium, originally isolated from the human oral cavity. Cells are pigmented and the name "ochracea" is derived from the yellow color exhibited by harvested cell mass. C.ochracea grows as fusiform to rod shaped cells which tend to form clumps and are able to move by gliding. It is known as a capnophilic organism with the ability to grow under anaerobic as well as aerobic conditions (oxygen concentration larger than 15%) C. ochracea is most often found in association with animal and human hosts. In general, it is a normal inhabitant of the human mouth and other non-oral sites. C. ochracea is associated with juvenile and adult periodontitis and can also be an opportunistic pathogens. It may cause severe infections in immunocompromised as well as in immunocompetent patients. Among these are endocarditis, endometritis, osteomyelitis, abscesses, peritonitis, and keratitis. C. ochracea is usually susceptible to a number of antibiotics, however, resistance is increasing in this species. Furthermore, C. ochracea is known to possess an immunosuppressive factor. All strains of C. ochracea are capable of fermenting glucose, sucrose, maltose and mannose, whereas most strains ferment amygdalin, fructose, galactose, lactose and raffinose. The optimal growth temperature is 37 degrees Celsius. Nitrate is reduced to nitrite, and dextran, glycogen, starch and aesculin are hydrolysed by most strains. Indole is not produced. Acetic and succinic acid are the main metabolic end products of fermentation. (Adapted from PMID 21304645). (HAMAP: CAPOD)

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusCapnocytophaga
SpeciesCapnocytophaga ochracea
StrainDSM 7271

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature35
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementChains - Singles
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityYes

Genome Summary

Capnocytophaga ochracea DSM 7271


Gene Summary

Adenine Count

789447 bp

Thymine Count

789074 bp

Guanine Count

517190 bp

Cytosine Count

517214 bp

Genome Length

2612925 bp

Protein-coding Genes

2165 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1017380 - 1017395Not Available
3_nc_021792: site specific recombinase, tyrosineCOCH_RS04280Not Available+1017454 - 101874349727.8
helix-turn-helix domain-containing proteinCOCH_RS04285Not Available-1018757 - 101902910778.2
hypothetical proteinCOCH_RS04290Not Available-1019149 - 10193618461.11
hypothetical proteinCOCH_RS04300Not Available+1020066 - 102112138696.5
hypothetical proteinCOCH_RS04305Not Available+1021147 - 102222339991.6
1_nc_021800: hypothetical proteinCOCH_RS04310Not Available+1022297 - 102286620880.6
hypothetical proteinCOCH_RS04315Not Available+1022887 - 102334517402.7
1_nc_021800: phage portal proteinCOCH_RS04320Not Available+1023369 - 102453844654.7
1_nc_021800: structural proteinCOCH_RS04325Not Available+1024535 - 102505920516.6

Displaying genes 1 – 10 of 2253 in total

Metabolites

361 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 361 metabolites