Helicobacter pylori B38

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter is a gram-negative, slow-growing organism. H. pylori has importance as a common human pathogen. Helicobacter pylori is composed of a single circular chromosome with 1,667,867 base pairs, containing about 1590 coding regions (TIGR, 2004).Helicobacter is a spiral shaped organism with flagella. It has a potent multisubunit urease enzyme that enables it to survive in acidic pH conditions and colonize the gastric environment (TIGR, 2004). H. pylori utilizes the enzyme urease to convert urea into bicarbonate and ammonia to combat the low acidity of the stomach. The mixing of the two extreme pH levels creates a neutralized protective cloud around the H. pylori, allowing it to survive in the stomach (Helicobacter Foundation, 2004).Helicobacter is able to live in the acidity of the stomach and duodenum, living on the mucus lining of the stomach, causing several health problems for the host (Helicobacter Foundation, 2004). Helicobacter can also be seen in animals such as cheetahs, dogs, cats, and ferrets (J. Solnick et al. 2004).Until the discovery of Helicobacter in 1982, ulcers were thought to be caused by stress. Now it is known that ulcers, in addition to gastritis, are caused by a bacterial infection of H. pylori. Though relatively easy to treat with antibiotics, H. pylori can be a risk factor for gastric cancer if it becomes a long-term infection (D. J. Kelly, 2004).The body's natural defenses cannot combat H. pylori because white and killer T cells cannot easily get through the stomach lining. The defense cells eventually die, spilling their superoxide radicals on stomach linig cells, on which H. pylori can feed (Helicobacter Foundation, 2004). (From http://microbewiki.kenyon.edu/index.php/Helicobacter) (MicrobeWiki: Helicobacter)

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainB38

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori B38
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityYes

Genome Summary

Helicobacter pylori B38


Gene Summary

Adenine Count

476459 bp

Thymine Count

482853 bp

Guanine Count

304179 bp

Cytosine Count

313267 bp

Genome Length

1576758 bp

Protein-coding Genes

1488 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
transcription antitermination factor nusbHELPY_RS00015Not Available-105 - 52115491.9
6,7-dimethyl-8-ribityllumazine synthaseHELPY_RS00020Not Available-523 - 99316991.7
3-deoxy-8-phosphooctulonate synthaseHELPY_RS00025Not Available-1003 - 183330257.5
carbonic anhydraseHELPY_RS00030Not Available-1820 - 248525697.6
orotidine-5'-phosphate decarboxylaseHELPY_RS00035Not Available+2605 - 328825340.1
pantoate--beta-alanine ligaseHELPY_RS00040Not Available+3289 - 411931009.9
Trna-gluNot AvailableNot Available+4133 - 4208Not Available
Trna-aspNot AvailableNot Available+4272 - 4348Not Available
Trna-valNot AvailableNot Available+4389 - 4464Not Available
Trna-gluNot AvailableNot Available+4505 - 4579Not Available

Displaying genes 1 – 10 of 1533 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da

Displaying 1–10 of 88 metabolites