Pectobacterium carotovorum subsp. carotovorum PC1

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium carotovorum subsp. carotovorum (strain ATCC 4698 / IFO 3333 / NCTC 2665) is a rod shaped plant pathogen Gram-negative bacterium. It is the causative agent of soft rot disease of potato tubers. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium carotovorum
StrainPC1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pectobacterium carotovorum subsp. carotovorum PC1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium carotovorum subsp. carotovorum PC1

NC_012917.1

Gene Summary

Adenine Count

1168310 bp

Thymine Count

1169207 bp

Guanine Count

1258460 bp

Cytosine Count

1266936 bp

Genome Length

4862913 bp

Protein-coding Genes

4113 genes

Non-Coding Genes

256 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Bacteriophage tail protein gptPC1_RS07840Not Available+1822882 - 182535988363.5
Tail terminatorPC1_RS07845Not Available+1825359 - 182628833381.3
Gp20, phage tail protein xPC1_RS07850Not Available+1826278 - 18264907874.53
Tail proteinPC1_RS07855Not Available+1826478 - 182763842373.5
Phage baseplate assembly proteinPC1_RS07860Not Available+1827635 - 182821620425.9
Putative baseplate assembly protein with lysozymePC1_RS07865Not Available+1828276 - 182862313005.6
Baseplate proteinPC1_RS07870Not Available+1828614 - 182971739390.7
Gp25, tail fiberPC1_RS07875Not Available+1829710 - 183029121743.7
Tail fiber proteinPC1_RS07880Not Available+1830294 - 183234273478.2
Putative tail fiber assembly proteinPC1_RS07885Not Available+1832342 - 183296223246.3

Displaying genes 41 – 50 of 4369 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1871 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da

Displaying 1–10 of 1871 metabolites