Dickeya chrysanthemi Ech1591

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya chrysanthemi strain Ech1591 is a Gram-negative bacterium that exhibits aerobic metabolic capabilities. As a member of the family Pectobacteriaceae, it is characterized by its rod-shaped morphology and its ability to thrive in the presence of oxygen. The Gram-negative nature of D. chrysanthemi Ech1591 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, a typical feature that often contributes to the organism's resilience in various environments. This bacterium's aerobic requirement indicates that it relies on oxygen for its metabolic processes, which may influence its ecological niche and interactions with other microorganisms. While the specific ecological roles or pathogenicity of D. chrysanthemi Ech1591 are not detailed in the available data, its classification within a genus known for causing soft rot in plants suggests that it may have implications in agricultural contexts. Understanding the traits of D. chrysanthemi Ech1591 can provide insights into its potential interactions within microbial communities, particularly in environments where oxygen availability is a key factor. This bacterium's aerobic nature may allow it to outcompete anaerobic microbes in oxygen-rich habitats, highlighting the importance of oxygen as a critical determinant in microbial ecology and dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya chrysanthemi
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya chrysanthemi Ech1591


Gene Summary

Adenine Count

1094482 bp

Thymine Count

1094991 bp

Guanine Count

1318509 bp

Cytosine Count

1305872 bp

Genome Length

4813854 bp

Protein-coding Genes

4132 genes

Non-Coding Genes

175 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
bifunctional trna (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase mnmd/fad-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase mnmcDD1591_RS06815Not Available-1543776 - 154579474011.9
beta-ketoacyl-acp synthase iDD1591_RS06820Not Available+1545953 - 154717342960.2
flagella biosynthesis regulator flkDD1591_RS06825Not Available-1547631 - 154884243558.8
tripartite tricarboxylate transporter permeaseDD1591_RS06830Not Available-1549105 - 155062253225.0
tripartite tricarboxylate transporter tctb family proteinDD1591_RS06835Not Available-1550638 - 155106615449.8
tripartite tricarboxylate transporter substrate binding proteinDD1591_RS06840Not Available-1551081 - 155205834952.2
transcriptional regulator tctdDD1591_RS06845Not Available+1552261 - 155293525183.6
sensor histidine kinaseDD1591_RS06850Not Available+1552922 - 155431351742.1
4-phosphoerythronate dehydrogenase pdxbDD1591_RS06855Not Available+1554455 - 155558841177.3
aspartate-semialdehyde dehydrogenaseDD1591_RS06860Not Available+1555674 - 155668436051.7

Displaying genes 1481 – 1490 of 4307 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1806 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1806 metabolites