Dickeya chrysanthemi Ech1591

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya chrysanthemi strain Ech1591 is a Gram-negative bacterium that exhibits aerobic metabolic capabilities. As a member of the family Pectobacteriaceae, it is characterized by its rod-shaped morphology and its ability to thrive in the presence of oxygen. The Gram-negative nature of D. chrysanthemi Ech1591 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, a typical feature that often contributes to the organism's resilience in various environments. This bacterium's aerobic requirement indicates that it relies on oxygen for its metabolic processes, which may influence its ecological niche and interactions with other microorganisms. While the specific ecological roles or pathogenicity of D. chrysanthemi Ech1591 are not detailed in the available data, its classification within a genus known for causing soft rot in plants suggests that it may have implications in agricultural contexts. Understanding the traits of D. chrysanthemi Ech1591 can provide insights into its potential interactions within microbial communities, particularly in environments where oxygen availability is a key factor. This bacterium's aerobic nature may allow it to outcompete anaerobic microbes in oxygen-rich habitats, highlighting the importance of oxygen as a critical determinant in microbial ecology and dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya chrysanthemi
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya chrysanthemi Ech1591

Accession NumberNC_012912.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4132 genes

Non-Coding Genes

175 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1726935 - 1726947Not Available
AttlNot AvailableNot Available+1726935 - 1726947Not Available
Prophage p4 integraseDD1591_RS21445Not Available-1729480 - 17296296096.19
alpa family transcriptional regulatorDD1591_RS07550Not Available-1729785 - 17299787013.56
NerDD1591_RS07555Not Available-1730176 - 173044810193.2
Hypothetical proteinDD1591_RS07560Not Available+1730623 - 173091010693.8
Hypothetical proteinDD1591_RS07565Not Available+1731096 - 173141011533.8
Prophage p4 integraseDD1591_RS07570Not Available-1731524 - 173279548535.5
Trna-asn;Not AvailableNot Available+1732957 - 1733032Not Available
Gp58DD1591_RS07580Not Available+1733417 - 17336809859.06

Displaying genes 1 – 10 of 4307 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

92 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002812aldehydo-D-glucose 6-phosphateC6H13O9PChemical structure of aldehydo-D-glucose 6-phosphateNot available
Average260.1358Da
Monoisotopic260.0297185Da
BASm00033646-phospho-beta-D-glucosyl-(1->4)-D-glucoseC12H21O14PChemical structure of 6-phospho-beta-D-glucosyl-(1->4)-D-glucoseNot available
Average420.261Da
Monoisotopic420.0679895Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm00107383-phosphoshikimateC7H8O8PChemical structure of 3-phosphoshikimateNot available
Average251.108Da
Monoisotopic250.997324955Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da

Displaying 1–10 of 92 metabolites