Methanosphaerula palustris E1-9c

CocciNon-motileAnaerobic

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanomicrobiales

Family

Methanoregulaceae

Genus

Methanosphaerula

Description

Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) is an anaerobic, methanogenic archaeon isolated from an organically rich wetland in central New York State. This organism is highly sensitive to the concentration of sulfur in the soil. This is the first cultured representative of a novel methanoarchaeal group important in wetlands and bioreactors and is relevant to bioenergy and carbon sequestration (adapted from http://genome.jgi-psf.org/metpa/metpa.home.html). (HAMAP: METPE)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanomicrobiales
FamilyMethanoregulaceae
GenusMethanosphaerula
SpeciesMethanosphaerula palustris
StrainE1-9c

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature30
Temperature rangeMesophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Methanosphaerula palustris E1-9c

NC_011832.1

Gene Summary

Adenine Count

648456 bp

Thymine Count

656519 bp

Guanine Count

810340 bp

Cytosine Count

807602 bp

Genome Length

2922917 bp

Protein-coding Genes

2840 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
orc1-type dna replication proteinMPAL_RS00005Not Available+409 - 170448835.8
lrp/asnc family transcriptional regulatorMPAL_RS00010Not Available+1710 - 220118751.4
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeMPAL_RS00015Not Available+2211 - 337742878.2
dna-methyltransferaseMPAL_RS00020Not Available+3462 - 465244436.1
class i sam-dependent methyltransferaseMPAL_RS00025Not Available-4632 - 551333978.0
gerw family sporulation proteinMPAL_RS00030Not Available+5616 - 604414886.8
duf2953 domain-containing proteinMPAL_RS00035Not Available+6074 - 677825290.2
hypothetical proteinMPAL_RS00040Not Available+6775 - 70118724.63
anaerobic ribonucleoside-triphosphate reductaseMPAL_RS00045Not Available-7020 - 921282286.9
glutaredoxin family proteinMPAL_RS00050Not Available-9209 - 94849902.94

Displaying genes 1 – 10 of 2909 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

42 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0002909O-acetyl-L-homoserineC6H11NO4Chemical structure of O-acetyl-L-homoserine7540-67-2
Average161.1558Da
Monoisotopic161.0688078Da
BASm0003138N(5)-formyl-5,6,7,8-tetrahydromethanopterinC31H42N6O17PChemical structure of N(5)-formyl-5,6,7,8-tetrahydromethanopterinNot available
Average801.677Da
Monoisotopic801.2360517Da
BASm00032005,6,7,8-tetrahydromethanopterinC30H45N6O16PChemical structure of 5,6,7,8-tetrahydromethanopterinNot available
Average776.6827Da
Monoisotopic776.2629659Da

Displaying 1–10 of 42 metabolites