Desulfitobacterium hafniense DCB-2

Gram-negativeBacilliMotileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Desulfitobacteriaceae

Genus

Desulfitobacterium

Description

Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) is an anaerobic dehalogenating, spore-forming, Gram-positive, bacterium isolated from municipal sludge. It grows by chlororespiration and dehalogenates a variety of aromatic and alkyl chlorinated compounds such as chlorinated phenols, chlorinated ethenes (widely used solvents) and there is suggestive evidence that it may also dechlorinate polychlorinated biphenyls (PCBs). D. hafniense utilizes fumarate, sulfite, and thiosulfate (but not thiousulfate) as terminal electron acceptors. (adapted from http://genome.jgi-psf.org/finished_microbes/desha/desha.home.html). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyDesulfitobacteriaceae
GenusDesulfitobacterium
SpeciesDesulfitobacterium hafniense
StrainDCB-2

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Desulfitobacterium hafniense DCB-2
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature37
Temperature rangeMesophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains- Pairs- Singles
SporulationSporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Desulfitobacterium hafniense DCB-2

NC_011830.1

Gene Summary

Adenine Count

1388107 bp

Thymine Count

1381467 bp

Guanine Count

1261094 bp

Cytosine Count

1248466 bp

Genome Length

5279134 bp

Protein-coding Genes

4850 genes

Non-Coding Genes

168 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1500302 - 1500313Not Available
GroesDHAF_RS07040Not Available+1512257 - 151254110332.8
Molecular chaperone groelDHAF_RS07045Not Available+1512641 - 151427557385.6
Prophage repressorDHAF_RS07050Not Available-1514420 - 151476112874.5
Hypothetical proteinDHAF_RS07055Not Available+1515479 - 151573910086.1
Rina-family transcriptional regulatorDHAF_RS07060Not Available+1515863 - 151629116864.4
Hypothetical proteinDHAF_RS26030Not Available+1516492 - 15166536170.58
Hypothetical proteinDHAF_RS07065Not Available+1516674 - 151714117791.2
Hypothetical proteinDHAF_RS07070Not Available+1517134 - 15173136834.14
Xkdk-like tail sheath proteinDHAF_RS07075Not Available+1517316 - 151863247222.9

Displaying genes 1 – 10 of 5018 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1439 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1439 metabolites