Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rhodopseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rhodopseudomonas |
| Species | Rhodopseudomonas palustris |
| Strain | TIE-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Soil |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Photolithoautotroph |
| Pathogenicity | No |
Genome Summary
Rhodopseudomonas palustris TIE-1
Accession NumberNC_011004.1
Gene Summary
Adenine Count
1008103 bp
Thymine Count
1010364 bp
Guanine Count
1866123 bp
Cytosine Count
1859451 bp
Genome Length
5744041 bp
Protein-coding Genes
5229 genes
Non-Coding Genes
145 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| heparinase ii/iii family protein | RPAL_RS00155 | Not Available | - | 33307 - 35022 | 62837.4 |
| rsmb/nop family class i sam-dependent rna methyltransferase | RPAL_RS00160 | A6TEU2 | - | 35360 - 36712 | 48086.8 |
| duf1674 domain-containing protein | RPAL_RS00165 | Not Available | + | 36865 - 37083 | 7785.09 |
| thermonuclease family protein | RPAL_RS00170 | Not Available | + | 37169 - 37744 | 21328.5 |
| yiix/yebb-like n1pc/p60 family cysteine hydrolase | RPAL_RS00175 | Not Available | - | 37748 - 38632 | 32311.8 |
| nad(p)/fad-dependent oxidoreductase | RPAL_RS00180 | Q7XUR2 | + | 38980 - 40437 | 50914.1 |
| phenylalanine--trna ligase subunit beta | RPAL_RS00185 | Q6NDR9 | - | 40444 - 42855 | 85215.9 |
| endonuclease domain-containing protein | RPAL_RS00190 | P44075 | - | 43000 - 43479 | 17824.1 |
| phenylalanine--trna ligase subunit alpha | RPAL_RS00195 | Q6NDR7 | - | 43710 - 44792 | 40116.9 |
| 50s ribosomal protein l20 | RPAL_RS00200 | Q6NDR6 | - | 44936 - 45295 | 13301.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.