Rhodopseudomonas palustris TIE-1

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Rhodopseudomonas

Description

Rhodopseudomonas palustris are phototrophic, purple non-sulfur bacteria commonly found in soils and water. They fix carbon dioxide and nitrogen, produce hydrogen, and degrade diverse biomass-associated aromatic compounds under anaerobic (phototrophic) and aerobic (heterotrophic) conditions. Against the background of general metabolic versatility of the R. palustris species there is considerable strain-to-strain diversity. Strain TIE-1, a genetically tractable bacterium, was isolated from an iron-rich mat from School Street Marsh in Woods Hole, USA. It is able to couple the oxidation of ferrous iron [Fe(II)] to reductive CO(2) fixation by using light energy, a form of photosynthesis that may be very old. The final product of Fe(II) oxidation accumulates exclusively outside the cell in the form of Fe(III) precipitates. Under anaerobic conditions, TIE-1 grows photoautotrophically with Fe(II), H2, or thiosulfate as the electron donor and photoheterotrophically with a variety of organic carbon sources; it also grows chemoheterotrophically in the dark. Phototrophically grown cells contain lamellar intracytoplasmic membranes (adapted from PubMed 16085840). (HAMAP: RHOPT)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusRhodopseudomonas
SpeciesRhodopseudomonas palustris
StrainTIE-1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhodopseudomonas palustris TIE-1
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature25
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourcePhotolithoautotroph
PathogenicityNo

Genome Summary

Rhodopseudomonas palustris TIE-1

Accession NumberNC_011004.1

Gene Summary

Adenine Count

1008103 bp

Thymine Count

1010364 bp

Guanine Count

1866123 bp

Cytosine Count

1859451 bp

Genome Length

5744041 bp

Protein-coding Genes

5229 genes

Non-Coding Genes

145 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinRPAL_RS27205Not Available-33 - 2307030.22
chromosomal replication initiator protein dnaaRPAL_RS00005B3QJZ9+220 - 163852568.9
dna polymerase iii subunit betaRPAL_RS00010P0CAU5+1872 - 299040460.4
dna replication/repair protein recfRPAL_RS00015Q8UJ65+3234 - 437340621.5
dna topoisomerase (atp-hydrolyzing) subunit bRPAL_RS00020P0CAX1+4590 - 703189297.2
4-hydroxyphenylpyruvate dioxygenaseRPAL_RS00025P80064-7213 - 833140715.1
lrp/asnc family transcriptional regulatorRPAL_RS00030P56901+8457 - 893617636.2
hwe histidine kinase domain-containing proteinRPAL_RS00035Not Available-8982 - 1043051087.9
circadian clock kaib family proteinRPAL_RS00040P73859-10430 - 1071410217.7
circadian clock protein kaicRPAL_RS00045P73860-10724 - 1241561936.9

Displaying genes 181 – 190 of 5374 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

379 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 379 metabolites