Rhizobium etli CIAT 652

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium etli, a soil-dwelling, symbiotic nitrogen-fixing bacterium, is the main nodulator of Phaseolus vulgaris, the common bean. It contains one chromosome and 6 large plasmids, which contribute approximately one third of the genome. This strain is of considerable agronomic importance. (HAMAP: RHIEC)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium etli
StrainCIAT 652

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhizobium etli CIAT 652
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Phaseolus vulgaris
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Rhizobium etli CIAT 652

NC_010998.1NC_010996.1NC_010994.1NC_010997.1

Gene Summary

Adenine Count

77101 bp

Thymine Count

79341 bp

Guanine Count

130851 bp

Cytosine Count

126797 bp

Genome Length

414090 bp

Protein-coding Genes

386 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
rhe_pe00001 family proteinRHECIAT_RS21685P55388+171 - 130441730.9
bax inhibitor-1/ycca family proteinRHECIAT_RS21690Q9ZE15-1426 - 213626031.1
anti-sigma factorRHECIAT_RS21695Not Available-2157 - 292427514.8
sigma-70 family rna polymerase sigma factorRHECIAT_RS21700B3Q6P8-2911 - 345020408.2
hypothetical proteinRHECIAT_RS21705Not Available+3627 - 393511382.6
cu(i)-responsive transcriptional regulatorRHECIAT_RS21710Q9X5V4-3941 - 433014698.4
heavy metal translocating p-type atpaseRHECIAT_RS21715Q9X5V3-4340 - 685987536.5
malto-oligosyltrehalose synthaseRHECIAT_RS21720Q44315-6948 - 955495746.9
penicillin-binding protein 1cRHECIAT_RS21725P76577-9635 - 1171674405.9
alpha-2-macroglobulin family proteinRHECIAT_RS21730Q9PDX7-11713 - 17187196617.0

Displaying genes 1 – 10 of 5263 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1733 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da

Displaying 1–10 of 1733 metabolites