Chlorobium limicola DSM 245

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Chlorobiota

Class

Chlorobiia

Order

Chlorobiales

Family

Chlorobiaceae

Genus

Chlorobium

Description

Chlorobium limicola is a green sulfur bacteria. Cells are rod-shaped, approximately 1.0 um wide and non-motile. Photosynthetic pigments are BChl c with chlorobactene as the major carotenoid, or in some strains, BChl e with isorenieratene. Photoautotrophic growth occurs with sulfide and sulfur as photosynthetic electron donors; molecular hydrogen and thiosulfate may be used. In the presence of sulfide and bicarbonate, some simple organic compounds are photoassimilated. Freshwater bacteria without a requirement for sodium chloride. Vitamin B12 is not required for growth. This is the type strain (adapted from PubMed 12892110). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumChlorobiota
ClassChlorobiia
OrderChlorobiales
FamilyChlorobiaceae
GenusChlorobium
SpeciesChlorobium limicola
StrainDSM 245

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Chlorobium limicola DSM 245
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Singles
SporulationNonsporulating
Energy sourcePhotosynthetic - Photoautotroph
PathogenicityNo

Genome Summary

Chlorobium limicola DSM 245

Accession NumberNC_010803.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2486 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaCLIM_RS00005Not Available+162 - 163755574.7
dna polymerase iii subunit betaCLIM_RS00010Not Available+1930 - 305441891.4
dna replication/repair protein recfCLIM_RS00015Not Available+3071 - 416241004.6
duf721 domain-containing proteinCLIM_RS00020Not Available+4159 - 446711902.6
fpra family a-type flavoproteinCLIM_RS00025Not Available-4546 - 576946013.9
dna polymerase domain-containing proteinCLIM_RS00030Not Available-6005 - 838690648.7
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgCLIM_RS00035Not Available-8448 - 1031368926.1
thiosulfate oxidation carrier protein soxyCLIM_RS00040Not Available+10793 - 1130218511.7
thiosulfate oxidation carrier complex protein soxzCLIM_RS00045Not Available+11339 - 1163510747.0
c-type cytochromeCLIM_RS00050Not Available+11700 - 1207113368.2

Displaying genes 1 – 10 of 2543 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

52 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00034561-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamideC15H21N5O15P2Chemical structure of 1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamideNot available
Average573.2993Da
Monoisotopic573.0509381Da
BASm0003462(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinateC13H19N4O12PChemical structure of (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate3031-95-6
Average454.2833Da
Monoisotopic454.0737086Da
BASm0003491(2S)-2-acetolactateC5H7O4Chemical structure of (2S)-2-acetolactateNot available
Average131.108Da
Monoisotopic131.0349823Da
BASm00035255-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideC15H21N5O15P2Chemical structure of 5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideNot available
Average573.303Da
Monoisotopic573.0531333Da
BASm00037365-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylateC14H13O9Chemical structure of 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylateNot available
Average325.251Da
Monoisotopic325.057602738Da
BASm0003763(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateC11H12NO6PChemical structure of (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateNot available
Average285.1898Da
Monoisotopic285.0402236Da
BASm0004092UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineC41H61N9O28P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineNot available
Average1189.924Da
Monoisotopic1189.312320676Da
BASm0004093di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineC87H139N7O23P2Chemical structure of di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineNot available
Average1713.045Da
Monoisotopic1711.941952079Da
BASm0004094di-trans-octa-cis-undecaprenyl diphospho-[N-acetyl-alpha-D-glucosaminyl-(1->4)]-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineC95H152N8O28P2Chemical structure of di-trans-octa-cis-undecaprenyl diphospho-[N-acetyl-alpha-D-glucosaminyl-(1->4)]-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineNot available
Average1916.239Da
Monoisotopic1915.021324602Da
BASm0004172(R)-4'-phosphopantetheineC11H21N2O7PSChemical structure of (R)-4'-phosphopantetheineNot available
Average356.33Da
Monoisotopic356.081806356Da

Displaying 21–30 of 52 metabolites