Chlorobium limicola DSM 245

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Chlorobiota

Class

Chlorobiia

Order

Chlorobiales

Family

Chlorobiaceae

Genus

Chlorobium

Description

Chlorobium limicola is a green sulfur bacteria. Cells are rod-shaped, approximately 1.0 um wide and non-motile. Photosynthetic pigments are BChl c with chlorobactene as the major carotenoid, or in some strains, BChl e with isorenieratene. Photoautotrophic growth occurs with sulfide and sulfur as photosynthetic electron donors; molecular hydrogen and thiosulfate may be used. In the presence of sulfide and bicarbonate, some simple organic compounds are photoassimilated. Freshwater bacteria without a requirement for sodium chloride. Vitamin B12 is not required for growth. This is the type strain (adapted from PubMed 12892110). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumChlorobiota
ClassChlorobiia
OrderChlorobiales
FamilyChlorobiaceae
GenusChlorobium
SpeciesChlorobium limicola
StrainDSM 245

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Chlorobium limicola DSM 245
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Singles
SporulationNonsporulating
Energy sourcePhotosynthetic - Photoautotroph
PathogenicityNo

Genome Summary

Chlorobium limicola DSM 245

Accession NumberNC_010803.1

Gene Summary

Adenine Count

671353 bp

Thymine Count

673851 bp

Guanine Count

703878 bp

Cytosine Count

714099 bp

Genome Length

2763181 bp

Protein-coding Genes

2486 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
duf4160 domain-containing proteinCLIM_RS06695Not Available+1438462 - 143873110361.6
duf2442 domain-containing proteinCLIM_RS06700Not Available+1438735 - 14389779054.9
ylci/ynfo family proteinCLIM_RS06705Not Available+1439081 - 143935010089.0
type ii toxin-antitoxin system rele/pare family toxinCLIM_RS06710Not Available+1439347 - 143964611461.8
type ii toxin-antitoxin system pemk/mazf family toxinCLIM_RS06715Not Available-1439785 - 144012012121.9
antitoxin maze family proteinCLIM_RS06720Not Available-1440117 - 14403298418.04
ribbon-helix-helix domain-containing proteinCLIM_RS06725Not Available+1440927 - 14411699044.82
type ii toxin-antitoxin system pemk/mazf family toxinCLIM_RS06730Not Available+1441154 - 144149212291.0
hypothetical proteinCLIM_RS06735Not Available-1441537 - 14417858742.71
homing endonuclease associated repeat-containing proteinCLIM_RS12730Not Available-1441999 - 1444902112321.0

Displaying genes 1341 – 1350 of 2543 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

52 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da

Displaying 1–10 of 52 metabolites