Methylacidiphilum infernorum V4

Non-motileAerobic

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Methylacidiphilae

Order

Methylacidiphilales

Family

Methylacidiphilaceae

Genus

Methylacidiphilum (ex Ratnadevi et al. 2023)

Description

Methylacidiphilum infernorum (isolate V4) is an extremely acidophilic aerobic methanotrophic bacterium isolated from the Hell's Gate (Tikitere), a methane-emitting geothermal field in the North of New Zealand. It is one of the first methanotrophic representative of the Verrucomicrobia, a diverse phylum that unites organisms with a remarkably broad range of lifestyles (many terrestrial and aquatic habitats), from intracellular parasites with some of the smallest known genomes to complex soil organisms. Methylacidiphilum infernorum , but also Acidimethylosilex fumarolicum (strain SolV) from Solfatara volcano mudpot (Italy), and Methyloacida kamchatkensis (strain Kam1) from an acidic hot spring in Kamchatka (Russia), are the the only known group of aerobic methanotrophs outside of the Proteobacteria phylum, and are by far the most acidophilic bacteria capable of methane oxidation The organism grows optimally at pH between 2.0 to 2.5 and temperature of 60 degrees Celsius when supplemented with 25% (v/v) methane as the sole source of energy. It is able to utilize methane as sole carbon source. M. infernorum possesses a streamlined genome but seems to have acquired numerous genes including those for enzymes of methylotrophic pathways via horizontal gene transfer, in particular, from Proteobacteria. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassMethylacidiphilae
OrderMethylacidiphilales
FamilyMethylacidiphilaceae
GenusMethylacidiphilum (ex Ratnadevi et al. 2023)
SpeciesCandidatus Methylacidiphilum infernorum
StrainV4

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceAutotroph- Methanotroph
PathogenicityNo

Genome Summary

Methylacidiphilum infernorum V4


Gene Summary

Adenine Count

622605 bp

Thymine Count

624283 bp

Guanine Count

516290 bp

Cytosine Count

523967 bp

Genome Length

2287145 bp

Protein-coding Genes

2079 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaMINF_RS00005Not Available+251 - 161551542.6
dna polymerase iii subunit betaMINF_RS00010Not Available+1822 - 293741842.3
hypothetical proteinMINF_RS00015Not Available+2950 - 333615182.0
signal peptidase iiMINF_RS00020Not Available+3421 - 390618788.2
quinolinate synthase nadaMINF_RS00025Not Available+3909 - 485035459.3
rna ligase partner proteinMINF_RS00030Not Available+4886 - 549422836.5
rna ligaseMINF_RS00035Not Available-5456 - 655642510.5
udp-glucose dehydrogenase family proteinMINF_RS00040Not Available+6854 - 814347927.5
adenylosuccinate synthaseMINF_RS00045Not Available+8155 - 942346791.3
isoprenyl transferaseMINF_RS00050Not Available+9606 - 1038829833.7

Displaying genes 1 – 10 of 2131 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

27 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002858all-trans-undecaprenyl phosphateC55H89O4PChemical structure of all-trans-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm0003116all-trans-undecaprenyl diphosphateC55H89O7P2Chemical structure of all-trans-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.6099999Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da

Displaying 1–10 of 27 metabolites