Methylorubrum populi BJ001

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Methylobacteriaceae

Genus

Methylorubrum

Description

Methylorubrum populi BJ001 is a Gram-negative, rod-shaped bacterium that exhibits a unique cellular arrangement, often found in pairs or singles. This microbe is classified as a methylotroph, indicating its ability to utilize methanol and other one-carbon compounds as an energy source. It thrives optimally at a temperature of 20.0°C, which suggests a preference for cooler environments that may be associated with its natural habitats. Methylorubrum populi BJ001 is strictly aerobic, necessitating the presence of oxygen for its metabolic processes. Its habitat is characterized as host-associated, which implies a potential symbiotic relationship with its host organism. This association could facilitate nutrient cycling or contribute to the host's metabolic capabilities, although specific interactions remain to be elucidated. The ecological significance of Methylorubrum populi BJ001 may lie in its role in the degradation of methanol in host-associated environments, possibly influencing carbon flux and nutrient dynamics within its ecosystem. Further research into its metabolic pathways and interactions with host organisms could provide insights into its contributions to microbial ecology and potential applications in bioremediation or biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylorubrum
SpeciesMethylorubrum populi
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Methylorubrum populi BJ001
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNot Available

Genome Summary

Methylorubrum populi BJ001

Accession NumberNC_010721.1

Gene Summary

Adenine Count

4069 bp

Thymine Count

3699 bp

Guanine Count

7417 bp

Cytosine Count

8207 bp

Genome Length

23392 bp

Protein-coding Genes

10 genes

Non-Coding Genes

17 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
tonb-dependent receptorMPOP_RS25295Not Available-5473952 - 547609375181.6
urease subunit gammaMPOP_RS25300Not Available+5476755 - 547705711035.5
urease subunit betaMPOP_RS25305Not Available+5477106 - 547751615328.0
urease subunit alphaMPOP_RS25310Not Available+5477600 - 547931860346.3
fluoride efflux transporter flucMPOP_RS25315Not Available+5479384 - 547976713153.2
fluoride efflux transporter crcbMPOP_RS25320Not Available+5479777 - 548016013392.6
urease accessory protein ureeMPOP_RS25325Not Available+5480186 - 548083924105.7
urease accessory protein urefMPOP_RS25330Not Available+5480839 - 548156126245.9
urease accessory protein uregMPOP_RS25335Not Available+5481582 - 548222923183.2
urease accessory protein uredMPOP_RS25340Not Available+5482234 - 548316934457.6

Displaying genes 5181 – 5190 of 5547 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

12 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002759dTDP-beta-L-rhamnoseC16H24N2O15P2Not availableNot available
Average546.316Da
Monoisotopic546.066289237Da
BASm0004172(R)-4'-phosphopantetheineC11H21N2O7PSChemical structure of (R)-4'-phosphopantetheineNot available
Average356.33Da
Monoisotopic356.081806356Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm0017265Uridine diphosphate-N-acetylglucosamineC17H27N3O17P2Chemical structure of Uridine diphosphate-N-acetylglucosamine528-04-1
Average607.3537Da
Monoisotopic607.081569477Da
BASm0017310dTDP-D-GlucoseC16H26N2O16P2Chemical structure of dTDP-D-Glucose2196-62-5
Average564.329Da
Monoisotopic564.075755818Da
BASm00175782'-(5-Triphosphoribosyl)-3'-dephospho-CoAC26H46N7O26P5SChemical structure of 2'-(5-Triphosphoribosyl)-3'-dephospho-CoANULL
Average1059.609Da
Monoisotopic1059.090127929Da
BASm0017620TDP-RhamnoseC17H26N2O14P2Chemical structure of TDP-RhamnoseNULL
Average544.3409Da
Monoisotopic544.085926574Da

Displaying 1–10 of 12 metabolites