Shewanella woodyi ATCC 51908

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella woodyi (strain ATCC 51908 / MS32) was originally isolated from the squid, sediment and water of the Alboran Sea (mixture of Atlantic and Mediterranean Sea) as a bioluminescent bacterium. Like its relative S. sediminis , S. woodyi was also able to degrade RDX with relatively lower activity. Genome sequencing of S. woodyi and S. sediminis as a pair will help understand how species of Shewanella degraded RDX. Shewanella are ubiquitous in marine environment and play important role in global carbon and nitrogen cycles. S. woodyi and S. sediminis are two bacteria from different geological regions of marine environment and have many complementary properties in carbon and nitrogen metabolism. Genome sequencing and comparative genomics of multiple strains of Shewanella will be used to unlock the genetic processes involved in carbon, nitrogen cycles and biodegradation of pollutants in marine environment. It is used in comparative genomics and in the carbon and nitrogen cycle in the marine environment. It's growth is at low temperature. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella woodyi
StrainATCC 51908

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shewanella woodyi ATCC 51908
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityYes

Genome Summary

Shewanella woodyi ATCC 51908


Gene Summary

Adenine Count

1666527 bp

Thymine Count

1675046 bp

Guanine Count

1293006 bp

Cytosine Count

1300824 bp

Genome Length

5935403 bp

Protein-coding Genes

4937 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaSWOO_RS00005Not Available+397 - 178552213.4
dna polymerase iii subunit betaSWOO_RS00010Not Available+1805 - 290541073.4
dna replication/repair protein recfSWOO_RS00015Not Available+3127 - 422441261.7
dna topoisomerase (atp-hydrolyzing) subunit bSWOO_RS00020Not Available+4226 - 664390044.9
mbnh family di-heme enzymeSWOO_RS00025Not Available-7093 - 828044317.3
mbnp family copper-binding proteinSWOO_RS25345Not Available-8277 - 898127086.2
choice-of-anchor b family proteinSWOO_RS00035Not Available+9178 - 1191397996.0
5-oxoprolinase subunit pxpaSWOO_RS00040Not Available-11944 - 1268426758.2
biotin-dependent carboxyltransferase family proteinSWOO_RS00045Not Available-12710 - 1365134314.1
5-oxoprolinase subunit pxpbSWOO_RS00050Not Available-13648 - 1432825301.2

Displaying genes 1 – 10 of 5098 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1843 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da

Displaying 1–10 of 1843 metabolites