Lactobacillus helveticus DPC 4571

Gram-positiveRodNon-motileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Lactobacillus

Description

Lactobacilli are normal inhabitants of the gastrointestinal tract of man and animals where they are widely considered to exert a number of beneficial roles including immunomodulation, interference with enteric pathogens, and maintenance of a healthy intestinal microflora. The genus Lactobacillus presently comprises more than 50 recognized species of non pathogenic bacteria which in addition to their probiotic effects are useful to human as indispensable agents for the fermentation of foods and feed.Lactobacillus helveticus DPC 4571 is a Swiss cheese isolate that has been thoroughly investigated as a starter and adjunct culture in cheese manufacture and demonstrates a number of highly desirable traits including rapid autolysis, reduced bitterness and increased flavor notes. It has two hundred and thirteen insertion sequence (IS) elements, ten times more than other fully sequenced lactobacilli. Genome alignments revealed an unprecedented level of genome stability between the Lactobacillus species considering the number of IS elements in the L. helveticus genome. Comparative analysis also indicated that the IS elements were not the primary agents of niche adaptation for the L. helveticus genome. A clear bias towards the loss of genes reported to be important for gut colonization was observed for the cheese culture but there was no clear evidence of IS associated gene deletion and decay for the majority of genes lost. An extraordinary level of sequence diversity exists between copies of certain IS elements in the DPC 4571 genome indicating they may represent an ancient component of the L. helveticus genome. (HAMAP: LACH4)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusLactobacillus
SpeciesLactobacillus helveticus
StrainDPC 4571

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceNot Available
Number of membranes1
Image of Lactobacillus helveticus DPC 4571
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Lactobacillus helveticus DPC 4571


Gene Summary

Adenine Count

656405 bp

Thymine Count

652979 bp

Guanine Count

392663 bp

Cytosine Count

378884 bp

Genome Length

2080931 bp

Protein-coding Genes

2074 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaLHV_RS00005Not Available+187 - 155452373.6
dna polymerase iii subunit betaLHV_RS00010Not Available+1719 - 284941680.3
s4 domain-containing protein yaaaLHV_RS00015Not Available+3076 - 33008423.08
dna replication/repair protein recfLHV_RS00020Not Available+3300 - 442743096.8
dna topoisomerase (atp-hydrolyzing) subunit bLHV_RS00025Not Available+4428 - 639272987.0
dna gyrase subunit aLHV_RS00030Not Available+6403 - 888692098.7
30s ribosomal protein s6LHV_RS00035Not Available+9105 - 940111339.5
single-stranded dna-binding proteinLHV_RS00040Not Available+9447 - 996518673.3
30s ribosomal protein s18LHV_RS00045Not Available+9994 - 102278912.94
isl3 family transposaseLHV_RS00050Not Available+10424 - 1167748591.1

Displaying genes 1 – 10 of 2150 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

322 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 322 metabolites