Shewanella pealeana ATCC 700345

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species. Shewanella pealeana ATCC 700345 was originally isolated from the Atlantic squid for their capacity to respire on sulfur. This bacterium was able to degrade hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) and was closely related to RDX-mineralizing bacterium S. halifaxensis. RDX is a member of a family of nitramine compounds which are used in the production of explosives. Genome sequencing of the present strain together with S. halifaxensis will help determine the genetic process responsible for RDX degradation. On the other hand, Shewanella are ubiquitous in marine environment and play very important role in global carbon and nitrogen cycle. The present strain is moderately halophilic, requiring sodium ions for growth. It can live at low temperatures and by reducing heavy metals Mn (IV) and Fe (III) and non-metal electron acceptors such as sulfur, fumarate, trimethylamine- N -oxide (TMAO), and thiosulfate. Genome sequencing and comparative genomics will unlock the genes involved in metabolism of carbon, nitrogen, metal, and sulfur in marine environment. Comparative genomics will also provide insight into how marine bacteria evolve to adapt to cold and salty marine environment. Also, it is involved in marine carbon and nitrogen metabolism. (HAMAP: SHEPA)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella pealeana
StrainATCC 700345

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shewanella pealeana ATCC 700345
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Loligo pealei
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Shewanella pealeana ATCC 700345


Gene Summary

Adenine Count

1430603 bp

Thymine Count

1432909 bp

Guanine Count

1160397 bp

Cytosine Count

1150672 bp

Genome Length

5174581 bp

Protein-coding Genes

4281 genes

Non-Coding Genes

181 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaSPEA_RS00015Not Available+223 - 160852235.5
dna polymerase iii subunit betaSPEA_RS00020Not Available+1628 - 272840986.5
dna replication/repair protein recfSPEA_RS00025Not Available+2849 - 393140662.0
dna topoisomerase (atp-hydrolyzing) subunit bSPEA_RS00030Not Available+3948 - 636589926.7
hdod domain-containing proteinSPEA_RS00035Not Available+6460 - 750639138.7
glycine--trna ligase subunit betaSPEA_RS00040Not Available-7582 - 965175549.9
glycine--trna ligase subunit alphaSPEA_RS00045Not Available-9663 - 1056834534.2
dna-3-methyladenine glycosylase iSPEA_RS00050Not Available+10686 - 1124621134.2
hypothetical proteinSPEA_RS00055Not Available-11265 - 1193024435.9
amidohydrolase family proteinSPEA_RS00060Not Available-12160 - 15360118338.0

Displaying genes 1 – 10 of 4462 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1841 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 1841 metabolites