Parvibaculum lavamentivorans DS-1

Gram-negativeBacilliMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Parvibaculaceae

Genus

Parvibaculum

Description

Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) is an aerobic, non-motile, Gram-negative, short rod. It is motile when growing with acetate, octane or in complex medium. It is able to metabolize a wide range of anionic and non-ionic surfactants and utilizes all representatives of the two major classes of surfactants used in laundry products in Germany, anionics and non-ionics. The epithet "lavamentivorans" stands for "consuming (chemicals) used for washing". (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Alphaproteobacteria
Order	Hyphomicrobiales
Family	Parvibaculaceae
Genus	Parvibaculum
Species	Parvibaculum lavamentivorans
Strain	DS-1

Profile

Physiology
Gram staining properties	Negative
Shape	Bacilli
Mobility	Yes
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobic
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	Multiple
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Heterotroph
Pathogenicity	No

Genome Summary

Parvibaculum lavamentivorans DS-1

Gene Summary

Adenine Count

725421 bp

Thymine Count

749338 bp

Guanine Count

1234135 bp

Cytosine Count

1205851 bp

Genome Length

3914745 bp

Protein-coding Genes

3665 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
hypothetical protein	PLAV_RS04690	Not Available	+	989608 - 989970	13053.2
Hypothetical protein	PLAV_RS04695	Not Available	+	990010 - 990201	6686.12
hypothetical protein	PLAV_RS04700	Not Available	+	990407 - 990598	6955.56
Hypothetical protein	PLAV_RS04705	Not Available	+	990722 - 991513	27762.4
30s ribosomal protein s20	PLAV_RS00015	Not Available	+	179 - 442	9664.89
rhodanese-like domain-containing protein	PLAV_RS00020	Not Available	+	996 - 1472	16840.9
chromosomal replication initiator protein dnaa	PLAV_RS00025	Not Available	+	1697 - 3127	53561.3
dna polymerase iii subunit beta	PLAV_RS00030	Not Available	+	3525 - 4643	40216.1
dna replication/repair protein recf	PLAV_RS00035	Not Available	+	4784 - 5920	40278.2
atp-dependent clp protease proteolytic subunit	PLAV_RS00040	Not Available	+	5920 - 6519	21950.4

Displaying genes 21 – 30 of 3734 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P		Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000250	2,5-didehydro-D-gluconateC6H7O7		`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000251	2-dehydropantoateC6H9O4		Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000253	2-oxopent-4-enoateC5H5O3		Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5		Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000377	(S)-malateC4H4O5		Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6		Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000401	(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8		Not available	Average286.218Da Monoisotopic286.0579371Da
BASm0000428	3-oxoadipateC6H6O5		Not available	Average158.11Da Monoisotopic158.022620453Da
BASm0000516	6-deoxyerythronolide BC21H38O6		Not available	Average386.5228Da Monoisotopic386.2668389Da

Displaying 1–10 of 1701 metabolites