Xanthobacter autotrophicus Py2

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Xanthobacteraceae

Genus

Xanthobacter

Description

A propene oxidizer able to degrade trichloroethylene when it is grown on propene because of the presence of propene monooxygenase. Xanthobacter autotrophicus Py2, an aerobic bacterium, was isolated following enrichment on propene and 1-butene. It is able degrade trichloroethylene when grown on propene due to the presence of a propene monooxygenase. It also degrades alkenes, epoxides and ketones. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyXanthobacteraceae
GenusXanthobacter
SpeciesXanthobacter versatilis
StrainPy2

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceNot Available
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNo

Genome Summary

Xanthobacter autotrophicus Py2

NC_009720.1NC_009717.1

Gene Summary

Adenine Count

857264 bp

Thymine Count

870014 bp

Guanine Count

1812851 bp

Cytosine Count

1768805 bp

Genome Length

5308934 bp

Protein-coding Genes

4747 genes

Non-Coding Genes

172 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
nickel-dependent hydrogenase large subunitXAUT_RS10925Not Available+2434794 - 243660866870.6
ni/fe-hydrogenase, b-type cytochrome subunitXAUT_RS10930Not Available+2436621 - 243737328147.6
hyad/hybd family hydrogenase maturation endopeptidaseXAUT_RS10935Not Available+2437768 - 243839421906.4
hypc/hybg/hupf family hydrogenase formation chaperoneXAUT_RS10940Not Available+2438398 - 243873011641.0
hydrogenaseXAUT_RS10945Not Available+2438730 - 243914014520.6
hydrogenase expression/formation proteinXAUT_RS10950Not Available+2439170 - 244002430197.0
[nife]-hydrogenase assembly chaperone hybeXAUT_RS10955Not Available+2440030 - 244094432469.5
nickel-dependent hydrogenase large subunitXAUT_RS10960Not Available+2440941 - 244193034025.0
hydrogenase maturation nickel metallochaperone hypaXAUT_RS10965Not Available+2441923 - 244226412251.9
hydrogenase nickel incorporation protein hypbXAUT_RS10970Not Available+2442264 - 244331036537.8

Displaying genes 2381 – 2390 of 5237 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1769 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 1769 metabolites