Xanthobacter autotrophicus Py2

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Xanthobacteraceae

Genus

Xanthobacter

Description

A propene oxidizer able to degrade trichloroethylene when it is grown on propene because of the presence of propene monooxygenase. Xanthobacter autotrophicus Py2, an aerobic bacterium, was isolated following enrichment on propene and 1-butene. It is able degrade trichloroethylene when grown on propene due to the presence of a propene monooxygenase. It also degrades alkenes, epoxides and ketones. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyXanthobacteraceae
GenusXanthobacter
SpeciesXanthobacter versatilis
StrainPy2

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceNot Available
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNo

Genome Summary

Xanthobacter autotrophicus Py2

NC_009720.1NC_009717.1

Gene Summary

Adenine Count

857264 bp

Thymine Count

870014 bp

Guanine Count

1812851 bp

Cytosine Count

1768805 bp

Genome Length

5308934 bp

Protein-coding Genes

4747 genes

Non-Coding Genes

172 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dmt family transporterXAUT_RS10390Not Available-2322257 - 232325533892.7
duf2312 domain-containing proteinXAUT_RS10395Not Available+2323594 - 23238579810.75
duf882 domain-containing proteinXAUT_RS10400Not Available-2323938 - 232539551053.4
l,d-transpeptidase family proteinXAUT_RS10405Not Available-2325813 - 232777468496.0
helix-turn-helix domain-containing proteinXAUT_RS10410Not Available-2327927 - 232846318628.2
m3 family oligoendopeptidaseXAUT_RS10415Not Available+2328910 - 233081770823.1
murein hydrolase activator envc family proteinXAUT_RS10420Not Available+2330971 - 233240449477.6
s41 family peptidaseXAUT_RS10425Not Available+2332401 - 233376248817.5
transporter substrate-binding domain-containing proteinXAUT_RS10430Not Available+2334030 - 233483928531.8
amino acid abc transporter permeaseXAUT_RS10435Not Available+2335039 - 233571324161.2

Displaying genes 2271 – 2280 of 5237 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

61 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00021245-dehydro-4-deoxy-D-glucarateC6H6O7Chemical structure of 5-dehydro-4-deoxy-D-glucarateNot available
Average190.1076Da
Monoisotopic190.0113525Da

Displaying 1–10 of 61 metabolites