Xanthobacter autotrophicus Py2

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Xanthobacteraceae

Genus

Xanthobacter

Description

A propene oxidizer able to degrade trichloroethylene when it is grown on propene because of the presence of propene monooxygenase. Xanthobacter autotrophicus Py2, an aerobic bacterium, was isolated following enrichment on propene and 1-butene. It is able degrade trichloroethylene when grown on propene due to the presence of a propene monooxygenase. It also degrades alkenes, epoxides and ketones. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyXanthobacteraceae
GenusXanthobacter
SpeciesXanthobacter versatilis
StrainPy2

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceNot Available
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNo

Genome Summary

Xanthobacter autotrophicus Py2


Gene Summary

Adenine Count

857264 bp

Thymine Count

870014 bp

Guanine Count

1812851 bp

Cytosine Count

1768805 bp

Genome Length

5308934 bp

Protein-coding Genes

4747 genes

Non-Coding Genes

172 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Portal proteinXAUT_RS15825Not Available+3499795 - 350097642484.7
giy-yig nuclease family proteinXAUT_RS15830Not Available+3501059 - 350134911390.6
hypothetical proteinXAUT_RS15835Not Available+3501601 - 35017896987.46
hypothetical proteinXAUT_RS27600Not Available+3501814 - 35020117042.58
Putative prohead proteaseXAUT_RS27605Not Available+3502015 - 350249416996.6
Putative major capsid proteinXAUT_RS15850Not Available+3502522 - 350380845217.3
Putative tape measure proteinXAUT_RS15855Not Available-3504095 - 350506033332.0
trypsin-like serine proteaseXAUT_RS15860Not Available-3505063 - 350580924360.6
Dna packaging/head-tail-connectorXAUT_RS15865Not Available+3506076 - 350663919762.9
Head-tail connector complex proteinXAUT_RS15870Not Available+3506636 - 350695611718.0

Displaying genes 1 – 10 of 5237 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

61 records
Metabolite IDMetabolite nameStructureCAS number
BASm0008132(8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphateC10H12N5O14P3Chemical structure of (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphateNot available
Average519.15Da
Monoisotopic518.9615554Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014035Glycolic acidC2H4O3Chemical structure of Glycolic acid79-14-1
Average76.0514Da
Monoisotopic76.016043994Da
BASm0017258Acetoacetic acidC4H6O3Chemical structure of Acetoacetic acid541-50-4
Average102.0886Da
Monoisotopic102.031694058Da
BASm0017265Uridine diphosphate-N-acetylglucosamineC17H27N3O17P2Chemical structure of Uridine diphosphate-N-acetylglucosamine528-04-1
Average607.3537Da
Monoisotopic607.081569477Da
BASm0017271NADC21H28N7O14P2Chemical structure of NAD53-84-9
Average664.433Da
Monoisotopic664.116946663Da
BASm0017287CarbamoylphosphateCH4NO5PChemical structure of Carbamoylphosphate590-55-6
Average141.0199Da
Monoisotopic140.982708755Da
BASm0017328AICARC9H15N4O8PChemical structure of AICAR3031-94-5
Average338.2112Da
Monoisotopic338.062749988Da
BASm0017347N1-(5-Phospho-a-D-ribosyl)-5,6-dimethylbenzimidazoleC14H19N2O7PChemical structure of N1-(5-Phospho-a-D-ribosyl)-5,6-dimethylbenzimidazoleNULL
Average358.2836Da
Monoisotopic358.092987484Da
BASm0017364(R)-2,3-Dihydroxy-isovalerateC5H10O4Chemical structure of (R)-2,3-Dihydroxy-isovalerateNULL
Average134.1305Da
Monoisotopic134.057908808Da

Displaying 41–50 of 61 metabolites