Methanococcus vannielii SB

Gram-negativeCocciNon-motileAnaerobic

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanococci

Order

Methanococcales

Family

Methanococcaceae

Genus

Methanococcus

Description

Methanococcus vannielii SB (strain SB / ATCC 35089 / DSM 1224) is an archaeon of the phylum Euryarchaeota. This type species of Methanococcus was isolated from a San Francisco Bay mud flat. Unlike other members of the genus which tend to be thermophilic, this species grows only between 20 and 40 degrees Celsius. (HAMAP: METVS)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanococci
OrderMethanococcales
FamilyMethanococcaceae
GenusMethanococcus
SpeciesMethanococcus vannielii
StrainSB

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Methanococcus vannielii SB
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature30
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceLithotroph
PathogenicityNo

Genome Summary

Methanococcus vannielii SB

Accession NumberNC_009634.1

Gene Summary

Adenine Count

592742 bp

Thymine Count

588444 bp

Guanine Count

270512 bp

Cytosine Count

268350 bp

Genome Length

1720048 bp

Protein-coding Genes

1513642 genes

Non-Coding Genes

206406 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
abc transporter atp-binding proteinMEVAN_RS02615Q57855+564947 - 56571128715.4
phou domain-containing proteinMEVAN_RS02620Q59035+565898 - 56675233321.6
diaminopimelate decarboxylaseMEVAN_RS02625Q58497+566863 - 56817348193.8
thermonuclease family proteinMEVAN_RS02630Q58834-568406 - 56897522187.3
trna (n6-threonylcarbamoyladenosine(37)-n6)-methyltransferase trmoMEVAN_RS02635Q58978-568983 - 56936614903.9
cobalt-precorrin-5b (c(1))-methyltransferase cbidMEVAN_RS02640A6UPK3-569359 - 57046840824.7
xaa-pro peptidase family proteinMEVAN_RS02645Q58216-570679 - 57169839012.0
3-phosphoshikimate 1-carboxyvinyltransferaseMEVAN_RS02650A6UPK5-571768 - 57305746706.7
type i glutamate--ammonia ligaseMEVAN_RS02655O59648+573226 - 57456649399.9
30s ribosomal protein s6eMEVAN_RS02660Q6LXY7+574897 - 57525312922.8

Displaying genes 531 – 540 of 1774 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

239 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 239 metabolites