Clostridium beijerinckii NCIMB 8052

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium beijerinckii species are ubiquitous in nature and routinely isolated from soil samples. C. beijerinckii NCIMB 8052 is a saccharolytic, strictly anaerobic, mesophyllic, motile, rod-shaped bacteria with oval, sub-terminal spores. It exhibits peritrichous flagella. During fermentation, it produces a number of products including acetate, butyrate, lactate, hydrogen gas, carbon dioxide, acetone, butanol, ethanol, acetoin and acetyl methyl carbonil. It is this capacity for solvent production (especially butanol, acetone, and isopropanol) that makes it biotechnologically interesting. It grows well and is easy to handle in simple, inexpensive media that is realistic for industrial use. The morphology of the cell changes over the growth cycle of the organism; at early exponential phase, the cells are long, filamentous and very motile. As the culture approaches the solventogenic stage, which corresponds with the stationary phase, cells shorten, become plumper and exhibit a lower level of motility (modified from http://genome.jgi-psf.org/finished_microbes/clobe/clobe.home.html). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium beijerinckii
StrainNCIMB 8052

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridium beijerinckii NCIMB 8052
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatFresh water - Soil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationSporulating
Energy sourceChemoorganotroph
PathogenicityNo

Genome Summary

Clostridium beijerinckii NCIMB 8052


Gene Summary

Adenine Count

2121554 bp

Thymine Count

2087554 bp

Guanine Count

904841 bp

Cytosine Count

886683 bp

Genome Length

6000632 bp

Protein-coding Genes

5189 genes

Non-Coding Genes

228 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1087328 - 1087339Not Available
Site-specific recombinase, phage integrase familyCBEI_RS04850Not Available+1087570 - 108817523598.6
hypothetical proteinCBEI_RS04855Not Available+1088382 - 10885616944.43
Hypothetical proteinCBEI_RS04860Not Available+1088636 - 108931627084.4
Hypothetical proteinCBEI_RS26455Not Available+1089442 - 108974711683.8
hypothetical proteinCBEI_RS04870Not Available+1089740 - 10899227005.6
Hypothetical proteinCBEI_RS04875Not Available+1090022 - 109039014343.7
Putative phage terminase, large subunitCBEI_RS04880Not Available+1090390 - 109205464325.9
Phage portal proteinCBEI_RS04885Not Available+1092072 - 109329546685.6
Putative prohead proteaseCBEI_RS04890Not Available+1093246 - 109383922474.2

Displaying genes 1 – 10 of 5417 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

438 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 438 metabolites