Roseiflexus sp. RS-1

Gram-negativeBacilliNon-motileFacultative

Kingdom

Bacillati

Phylum

Chloroflexota

Class

Chloroflexia

Order

Chloroflexales

Family

Roseiflexaceae

Genus

Roseiflexus

Description

Roseiflexus is a filamentous anoxygenic phototroph, one of the green filamentous bacteria. This lineage is placed on the deepest branch of all photosynthetic bacteria. RS-1 was isolated from a microbial mat in Octopus Spring, in Yellowstone National Park, U.S.A. It does not have chlorosomes, which are a type of light-harvesting structure. Comparative genomics indicates that it appears to have the genetic capacity for CO2 reduction via the 3-hydroxypropionate pathway (adapted in part from PubMed 17635550). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumChloroflexota
ClassChloroflexia
OrderChloroflexales
FamilyRoseiflexaceae
GenusRoseiflexus
SpeciesRoseiflexus sp. RS-1
StrainRS-1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNonsporulating
Energy sourcePhotosynthetic- Photoautotroph
PathogenicityNo

Genome Summary

Roseiflexus sp. RS-1

NC_009523.1

Gene Summary

Adenine Count

1148835 bp

Thymine Count

1149332 bp

Guanine Count

1750343 bp

Cytosine Count

1753088 bp

Genome Length

5801598 bp

Protein-coding Genes

4765 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
fad-binding domain-containing proteinROSERS_RS00055Not Available+13336 - 1414831381.7
1-acyl-sn-glycerol-3-phosphate acyltransferaseROSERS_RS00060Not Available+14126 - 1515137920.5
hypothetical proteinROSERS_RS00065Not Available+15231 - 1568617228.8
alpha-amylase family glycosyl hydrolaseROSERS_RS00070Not Available+15683 - 1747064261.6
sdr family oxidoreductaseROSERS_RS00075Not Available-18072 - 1893831484.9
hypothetical proteinROSERS_RS00080Not Available-18954 - 1937915161.3
tetr/acrr family transcriptional regulatorROSERS_RS00085Not Available-19469 - 2017625807.0
hypothetical proteinROSERS_RS00090Not Available+20290 - 2059510672.6
hypothetical proteinROSERS_RS00095Not Available+21474 - 216626882.22
duf4258 domain-containing proteinROSERS_RS00100Not Available+21659 - 2197012265.6

Displaying genes 11 – 20 of 4822 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

262 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da

Displaying 1–10 of 262 metabolites