Dichelobacter nodosus VCS1703A

Gram-negativeBacilliNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cardiobacteriales

Family

Cardiobacteriaceae

Genus

Dichelobacter

Description

Dichelobacter nodosus (strain VCS1703A) is an aerotolerant anaerobe that is the principal causative agent of footrot in ruminants, a disease that leads to severe economic losses in the wool and meat industries. This Gram-negative bacterium is phylogenetically associated with the gamma subdivision of the Proteobacteria. The small size of the D. nodosus genome makes it the smallest anaerobic bacterium sequenced to date and places it among the smallest non-intracellular bacterial pathogens yet characterized. It differs markedly from small genomes of intracellular bacteria, retaining greater biosynthetic capabilities and lacking any evidence of extensive ongoing genome reduction (only six pseudogenes have been identified in D. nodosus). Almost 20% of the genome is derived from lateral gene transfer. Most of these regions seem to be associated with virulence. Though compact, its genome shows intergenic spacing that, in average, is closer to the median observed in prokaryotic genomes. D. nodosus lacks various metabolic pathways related to amino acid biosynthesis and is capable only of weak short-term, but not sustained, growth under microaerophilic conditions. The analysis of its metabolic pathways showed unsuspected capabilities, including carbohydrate utilization, electron transfer and several aerobic pathways. Once aerotolerant Dichelobacter nodosus infects the host, which it does through the production of a number of fimbrial adhesins, it secretes both extracellular proteases and toxins resulting in damage to the soft tissue underneath the horn of the hoof. Infection with D. nodosus requires climatic conditions of warm weather and moist pastures. D. nodosus can undergo serogroup conversion, and reservoirs of serogroups are found in infected hooves. This limits the value of available vaccines. The analysis of its genome revealed several immunogenic proteins that are candidate antigens for a cross-protective vaccine. Strain VCS1703A is virulent and naturally transformable. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCardiobacteriales
FamilyCardiobacteriaceae
GenusDichelobacter
SpeciesDichelobacter nodosus
StrainVCS1703A

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Dichelobacter nodosus VCS1703A
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Dichelobacter nodosus VCS1703A


Gene Summary

Adenine Count

384189 bp

Thymine Count

388348 bp

Guanine Count

304484 bp

Cytosine Count

312328 bp

Genome Length

1389350 bp

Protein-coding Genes

1270 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+788798 - 788810Not Available
Virion morphogenesis proteinDNO_RS06805Not Available+793659 - 79515857700.1
hypothetical proteinDNO_RS03655Not Available+795155 - 79557715924.8
duf2190 family proteinDNO_RS03660Not Available+795669 - 79606714131.0
hypothetical proteinDNO_RS03665Not Available+796078 - 79689930052.5
Major capsid proteinDNO_RS03670Not Available+796902 - 79788836474.7
Hypothetical proteinDNO_RS03675Not Available+797910 - 79837717022.4
Virion morphogenesis proteinDNO_RS06810Not Available+798374 - 79879915242.0
hypothetical proteinDNO_RS03685Not Available+798780 - 79924717010.4
Putative tail protein aDNO_RS03690Not Available+799244 - 80001128286.7

Displaying genes 1 – 10 of 1354 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1637 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 1637 metabolites