Herminiimonas arsenicoxydans

Gram-negativeBacilliMotileAnaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herminiimonas

Description

Herminiimonas arsenicoxydans strain ULPAs1 (formerly called Caenibacter arsenoxydans ULPAs1, or Cenibacterium arsenoxydans) is an heterotrophic bacterium isolated from the activated sludge of an industrial water treatment plant contaminated with heavy metals such as arsenic, lead, copper, and silver. H. arsenicoxydans is the first fully characterized arsenic-metabolizing microorganism. It is phylogenetically associated with the beta subdivision of the Proteobacteria and belongs to the new genus Herminiimonas comprising bacteria isolated from diverse aquatic environments and anthropized ecosystems. H. arsenicoxydans possesses unsuspected mechanisms for coping with arsenic. Aside from multiple biochemical processes such as arsenic oxidation/reduction, oxidative stress resistance and As[III] extrusion (efflux), H. arsenicoxydans also exhibits positive chemotaxis and motility towards arsenic and metalloid scavenging by exopolysaccharides. These observations demonstrate the existence of a novel strategy to efficiently colonize arsenic-rich environments, which extends beyond oxidoreduction reactions. Genomic and experimental data demonstrated that this organism is capable of accommodating the presence of high concentrations of various toxic metals such as cadmium and zinc. However, except for arsenic, the resistance levels to toxic metals were much lower than those measured in the metallophilic R. metallidurans, which contains multiple plasmid-encoded genes, suggesting a specific physiological adaptation of H. arsenicoxydans toward arsenic. Three clusters of genes involved in resistance to arsenic were identified. Quantitative analysis of the transporter-encoding gene mRNA demonstrated that the resistance operons are either constitutively expressed or induced in the presence of As[III] in H. arsenicoxydans. H. arsenicoxydans can accommodate a wide range of oxygen. Indeed, the H. arsenicoxydans genome harbors multiple respiratory pathways, permitting microorganisms to grow under aerobic, microaerobic, and anoxic conditions. Remarkably, the versatile regulatory system of H. arsenicoxydans enables it to sense dynamic changes in arsenic concentration and to initiate motility and EPS synthesis for attachment to this metalloid. Recent results suggest that microbial biofilms are involved in the adsorption and immobilization of metals (such as Pb[II] and Cr[III]). The ability of H. arsenicoxydans to scavenge arsenic in an EPS matrix may be of prime importance in the context of bioremediation of contaminated environments, leading to the sequestration of this toxic metalloid. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerminiimonas
SpeciesHerminiimonas arsenicoxydans
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Herminiimonas arsenicoxydans
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature25
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Herminiimonas arsenicoxydans


Gene Summary

Adenine Count

782896 bp

Thymine Count

782186 bp

Guanine Count

928572 bp

Cytosine Count

930653 bp

Genome Length

3424307 bp

Protein-coding Genes

3219 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
efflux transporter outer membrane subunitHEAR_RS00155Not Available+34495 - 3593750603.6
efflux rnd transporter periplasmic adaptor subunitHEAR_RS00160Not Available+35998 - 3714940129.5
efflux rnd transporter permease subunitHEAR_RS00165Not Available+37158 - 40277110869.0
pig-l deacetylase family proteinHEAR_RS00170Not Available+40295 - 4102926948.9
hypothetical proteinHEAR_RS00175Not Available+41047 - 412869074.6
sensor histidine kinaseHEAR_RS00180Not Available-41307 - 4243441116.9
hypothetical proteinHEAR_RS00185Not Available-42539 - 4304518788.8
acyltransferaseHEAR_RS00190Not Available+43257 - 4436040585.0
nitric-oxide reductase large subunitHEAR_RS00195Not Available-44411 - 4668484842.5
phosphoethanolamine--lipid a transferaseHEAR_RS00200Not Available-46874 - 4854762083.0

Displaying genes 31 – 40 of 3219 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1783 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da

Displaying 1–10 of 1783 metabolites