Staphylothermus marinus F1

CocciNon-motileAnaerobic

Kingdom

Thermoproteati

Phylum

Thermoproteota

Class

Thermoprotei

Order

Desulfurococcales

Family

Desulfurococcaceae

Genus

Staphylothermus

Description

Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) is a strictly anaerobic, hyperthermophilic archaeon phylogenetically associated with the kingdom Crenarchaeota. This organism was isolated from hydrothermal marine sediment from Vulcano Island in Italy. Staphylothermus marinus is heterotrophic and requires sulfur, which is reduced to H2S, for growth. It is slightly irregular coccus, which exhibits optimal growth at 92 degrees Celsius. (HAMAP: STAMF)

Taxonomy

KingdomThermoproteati
PhylumThermoproteota
ClassThermoprotei
OrderDesulfurococcales
FamilyDesulfurococcaceae
GenusStaphylothermus
SpeciesStaphylothermus marinus
StrainF1

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature92
Temperature rangeHyperthermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Staphylothermus marinus F1

NC_009033.1

Gene Summary

Adenine Count

515199 bp

Thymine Count

494206 bp

Guanine Count

288188 bp

Cytosine Count

272892 bp

Genome Length

1570485 bp

Protein-coding Genes

1639 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
energy-coupling factor abc transporter permeaseSMAR_RS00010Not Available+1055 - 169922529.4
pdgle domain-containing proteinSMAR_RS00015Not Available+1706 - 199610477.2
energy-coupling factor transporter transmembrane component tSMAR_RS00020Not Available+1993 - 278730000.7
energy-coupling factor abc transporter atp-binding proteinSMAR_RS00025Not Available+2774 - 345125868.5
copg family ribbon-helix-helix proteinSMAR_RS00030Not Available+3514 - 391815234.1
carbohydrate kinase family proteinSMAR_RS00035Not Available-3934 - 486333591.7
nad(p)/fad-dependent oxidoreductaseSMAR_RS00040Not Available-5154 - 629342642.5
(2fe-2s)-binding proteinSMAR_RS00045Not Available-6300 - 658110837.6
atp-binding proteinSMAR_RS00050Not Available-6563 - 704818005.3
fad-dependent oxidoreductaseSMAR_RS00055Not Available-7038 - 852254457.2

Displaying genes 1 – 10 of 1684 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

25 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0003334aldehydo-D-ribose 5-phosphateC5H11O8PChemical structure of aldehydo-D-ribose 5-phosphateNot available
Average230.1098Da
Monoisotopic230.0191538Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003686(2E,6E,10E)-geranylgeranyl diphosphateC20H33O7P2Chemical structure of (2E,6E,10E)-geranylgeranyl diphosphateNot available
Average447.426Da
Monoisotopic447.171798138Da
BASm0003747CDP-2,3-bis-O-(geranylgeranyl)-sn-glycerolC52H83N3O13P2Chemical structure of CDP-2,3-bis-O-(geranylgeranyl)-sn-glycerolNot available
Average1020.193Da
Monoisotopic1019.5412109Da
BASm0014035Glycolic acidC2H4O3Chemical structure of Glycolic acid79-14-1
Average76.0514Da
Monoisotopic76.016043994Da

Displaying 1–10 of 25 metabolites