Yersinia enterocolitica subsp. enterocolitica 8081

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia enterocolitica is a mammalian gastrointestinal pathogen composed of six biotypes. The biotypes group into three types of pathogen; mouse nonpathogens (biotype 1A), weak mouse pathogens (biotypes 2-5) and a mouse-lethal group (biotype 1B), of which this strain is a member. Biotype 1B is a primarily New World strain. Y.enterocolitica and Y.pseudotuberculosis are thought to have diverged in the last 200 million years, while it has been proposed that Y.pestis (the causative agent of plague) evolved from Y.pseudotuberculosis 1,500-20,000 years ago. Y.pseudotuberculosis and Y.pestis cause more severe clinical symptoms than Y.enterocolitica. The availability of representatives of all three Yersinia species has allowed comparison of gene loss and acquisitions since they diverged. It seems that despite both being enteric pathogens, Y.enterocolitica and Y.pseudotuberculosis occupy different niches as seen by differential losses of presumably adaptive functions such as cellulose biosynthetic genes (present only in Y. enterocolitica) and osmoregulated periplasmic glucan biosynthetic pathway (probably not succinylated in Y.pseudotuberculosis). Like all Yersinia, Y.enterocolitica has an approximately 70 kb virulence plasmid. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia enterocolitica
Strain8081

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Yersinia enterocolitica subsp. enterocolitica 8081
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityYes

Genome Summary

Yersinia enterocolitica subsp. enterocolitica 8081


Gene Summary

Adenine Count

19032 bp

Thymine Count

18945 bp

Guanine Count

14945 bp

Cytosine Count

14799 bp

Genome Length

67721 bp

Protein-coding Genes

72 genes

Non-Coding Genes

20 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Partitioning protein spybYE_RS21410Not Available-42931 - 4389635778.9
Plasmid partition protein sopaYE_RS21415Not Available-43893 - 4505943436.0
hypothetical proteinYE_RS21420Not Available-45373 - 455887744.15
Is1477 transposaseYE_RS21880Not Available-45764 - 458563624.56
dmt family transporterYE_RS21425Not Available-46109 - 4698432284.3
Tail proteinYE_RS21430Not Available-47054 - 4832244141.1
Isxcc1 transposaseYE_RS21435Not Available+48931 - 4948521875.7
AttlNot AvailableNot Available+49510 - 49523Not Available
Issod4, transposaseYE_RS21440Not Available+49605 - 5080745598.7
hypothetical proteinYE_RS21445Not Available-50937 - 5123911164.3

Displaying genes 11 – 20 of 92 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1797 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1797 metabolites