Yersinia enterocolitica subsp. enterocolitica 8081

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia enterocolitica is a mammalian gastrointestinal pathogen composed of six biotypes. The biotypes group into three types of pathogen; mouse nonpathogens (biotype 1A), weak mouse pathogens (biotypes 2-5) and a mouse-lethal group (biotype 1B), of which this strain is a member. Biotype 1B is a primarily New World strain. Y.enterocolitica and Y.pseudotuberculosis are thought to have diverged in the last 200 million years, while it has been proposed that Y.pestis (the causative agent of plague) evolved from Y.pseudotuberculosis 1,500-20,000 years ago. Y.pseudotuberculosis and Y.pestis cause more severe clinical symptoms than Y.enterocolitica. The availability of representatives of all three Yersinia species has allowed comparison of gene loss and acquisitions since they diverged. It seems that despite both being enteric pathogens, Y.enterocolitica and Y.pseudotuberculosis occupy different niches as seen by differential losses of presumably adaptive functions such as cellulose biosynthetic genes (present only in Y. enterocolitica) and osmoregulated periplasmic glucan biosynthetic pathway (probably not succinylated in Y.pseudotuberculosis). Like all Yersinia, Y.enterocolitica has an approximately 70 kb virulence plasmid. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia enterocolitica
Strain8081

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Yersinia enterocolitica subsp. enterocolitica 8081
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityYes

Genome Summary

Yersinia enterocolitica subsp. enterocolitica 8081


Gene Summary

Adenine Count

19032 bp

Thymine Count

18945 bp

Guanine Count

14945 bp

Cytosine Count

14799 bp

Genome Length

67721 bp

Protein-coding Genes

72 genes

Non-Coding Genes

20 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+38269 - 38281Not Available
Transposase insfYE_RS21375Not Available-39747 - 4019617034.5
group ii intron maturase-specific domain-containing proteinYE_RS21380Not Available-40240 - 4078821305.8
is3 family transposaseYE_RS21385Not Available-40788 - 409436393.77
type ii toxin-antitoxin system rele/pare family toxinYE_RS21390Not Available-41132 - 4143411825.1
type ii toxin-antitoxin system pard family antitoxinYE_RS21395Not Available-41427 - 416698856.72
Transposase is26YE_RS21400Not Available-41835 - 4212711469.1
AttlNot AvailableNot Available+42144 - 42156Not Available
Dna polymeraseYE_RS21640Not Available+42212 - 423856450.66
hypothetical proteinYE_RS21405Not Available-42535 - 427718483.31

Displaying genes 1 – 10 of 92 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

33 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001885Tetra-mu3-sulfido-tetrairon(1+)Fe4S4Chemical structure of Tetra-mu3-sulfido-tetrairon(1+)Not available
Average351.62Da
Monoisotopic351.62748Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm00021923-(2,3-dihydroxyphenyl)propanoateC9H9O4Chemical structure of 3-(2,3-dihydroxyphenyl)propanoateNot available
Average181.1654Da
Monoisotopic181.0500838Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da
BASm0002906all-trans-octaprenyl diphosphateC40H65O7P2Chemical structure of all-trans-octaprenyl diphosphateNot available
Average719.8874Da
Monoisotopic719.4205525Da
BASm0003631(1R,6R)-6-hydroxy-2-succinyl-cyclohexa-2,4-diene-1-carboxylateC11H10O6Chemical structure of (1R,6R)-6-hydroxy-2-succinyl-cyclohexa-2,4-diene-1-carboxylateNot available
Average238.196Da
Monoisotopic238.0488352Da
BASm00037841,4-dihydroxy-2-naphthoyl-CoAC32H38N7O19P3SChemical structure of 1,4-dihydroxy-2-naphthoyl-CoANot available
Average949.67Da
Monoisotopic949.117798519Da

Displaying 1–10 of 33 metabolites