Pediococcus pentosaceus ATCC 25745

Gram-positiveCocciNon-motileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Pediococcus

Description

Pediococcus pentosaceus are Gram-positive, facultatively anaerobic, non-motile and non-spore-forming members of the industrially important lactic acid bacteria. Like other lactic acid bacteria, P. pentosaceus are acid tolerant, cannot synthesize porphyrins, and possess a strictly fermentative metabolism with lactic acid as the major metabolic end product. P. pentosaceus can be isolated from a variety of plant materials and bacterial ripened cheeses. This organism is used as an acid producing starter culture in sausage fermentations, cucumber and green bean fermentations, soya milk fermentations, and silage. P. pentosaceus are also a typical component of the adventitious or non-starter microflora of most cheese varieties during ripening. In addition, it has been suggested that this organism may have value as an acid-producing starter culture in the dairy fermentations. Pediococcus divide alternatively in 2 perpendicular planes to form tetrads (adapted from http://genome.jgi-psf.org/pedpe/pedpe.home.html). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusPediococcus
SpeciesPediococcus pentosaceus
StrainATCC 25745

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Pediococcus pentosaceus ATCC 25745
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementTetrads
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Pediococcus pentosaceus ATCC 25745


Gene Summary

Adenine Count

573424 bp

Thymine Count

574423 bp

Guanine Count

342399 bp

Cytosine Count

342141 bp

Genome Length

1832387 bp

Protein-coding Genes

1667 genes

Non-Coding Genes

158 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
DutpasePEPE_RS03630Not Available+779046 - 77958521201.1
hypothetical proteinPEPE_RS03635Not Available+779890 - 7801178992.35
hypothetical proteinPEPE_RS03640Not Available-780257 - 7804607944.19
AttlNot AvailableNot Available+780673 - 780697Not Available
Phage integrasePEPE_RS03645Not Available-780798 - 78193743984.7
hypothetical proteinPEPE_RS03650Not Available-782084 - 78248815312.0
Lj965 prophage repressor-like proteinPEPE_RS03655Not Available-782546 - 78288112721.9
Rad proteinPEPE_RS03660Not Available-782987 - 78333713118.7
multiprotein-bridging factor 1 family proteinPEPE_RS03665Not Available+783594 - 7838037881.74
hypothetical proteinPEPE_RS03670Not Available+783817 - 7839966760.25

Displaying genes 1 – 10 of 1825 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

454 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da

Displaying 1–10 of 454 metabolites