Synechococcus sp. CC9311

Gram-negativeCocciMotileFacultative

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Synechococcales

Family

Synechococcaceae

Genus

Synechococcus

Description

Marine unicellular cyanobacteria of the synechococcus group occupy an important position at the base of the marine food chain. They are abundant in the world's oceans and as a result are one of the most numerous genomes on earth. They have the ability to acquire major nutrients and trace metals from the submicromolar concentrations found in the oligotrophic open seas and their light-harvesting apparatus is uniquely adapted to the spectral quality of light in the ocean.A third of the open ocean isolates of synechococcus possess a unique type of swimming motility not seen in any other type of microorganism, they propel themselves through seawater at speeds of up to 25 mm/sec despite their lack of external propelling devices. They do not use their motility to respond to light gradients, but instead to respond to extremely small gradients of nitrogenous compounds.Synechococcus sp. strain WH8102 is a motile strain that can be grown in both natural and artificial seawater liquid media as well as on plates and is amenable to biochemical and genetic manipulation. The availability of the complete sequence of the genome of synechococcus WH8102 will provide insights not only into the unique adaptations of this cyanobacterial group to the marine environment, including mechanisms of nutrient and metal transport, chemotaxis, motility, and viral interactions but also into what factors might be ultimately important in controlling primary productivity in the oceans.Marine synechococcus spp. coexist with the other abundant unicellular marine cyanobacterial group, prochlorococcus . A major difference between the synechococcus and prochlorococcus groups lies in their light-harvesting apparatus, with synechococcus utilizing chlorophyll A, and prochlorococcus relying on divinyl chlorophylls A and B. A comparative analysis of their genomes should allow insights not only into the evolution of light-harvesting complexes, but also into cyanobacterial diversification in the oceans, including adaptations to different marine niches.Marine unicellular cyanobacteria are responsible for an estimated 20-40% of chlorophyll biomass and carbon fixation in the oceans.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderSynechococcales
FamilySynechococcaceae
GenusSynechococcus
SpeciesSynechococcus sp. CC9311
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Synechococcus sp. CC9311
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourcePhotosynthetic- Photoautotroph
PathogenicityNo

Genome Summary

Synechococcus sp. CC9311


Gene Summary

Adenine Count

618673 bp

Thymine Count

620905 bp

Guanine Count

682327 bp

Cytosine Count

684843 bp

Genome Length

2606748 bp

Protein-coding Genes

2718 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
gspe/pule family proteinSYNC_RS00115Not Available-26600 - 2837264279.1
nucleotide exchange factor grpeSYNC_RS00120Not Available+28452 - 2918026359.2
molecular chaperone dnajSYNC_RS00125Not Available+29223 - 3035340240.2
sulfurtransferase tusa family proteinSYNC_RS00130Not Available+30357 - 305998961.73
ribosome small subunit-dependent gtpase aSYNC_RS00135Not Available+30586 - 3150033687.6
ybab/ebfc family nucleoid-associated proteinSYNC_RS00140Not Available-31475 - 3181612241.4
udp-n-acetylmuramate dehydrogenaseSYNC_RS00145Not Available-31841 - 3277933171.4
udp-n-acetylmuramate--l-alanine ligaseSYNC_RS00150Not Available-32755 - 3420652300.5
type i glyceraldehyde-3-phosphate dehydrogenaseSYNC_RS00155Not Available+34373 - 3539837109.2
thiamine-phosphate kinaseSYNC_RS00160Not Available-35461 - 3644135430.1

Displaying genes 21 – 30 of 2772 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

250 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da

Displaying 1–10 of 250 metabolites